Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57093284..57096494-chr1:57097572..57100834,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1041604	1.00[CEU][hapmap]
rs10888996	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10888997	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10888999	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11206880	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206883	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12032377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12073253	0.82[ASN][1000 genomes]
rs12126955	1.00[CEU][hapmap]
rs1777275	1.00[CEU][hapmap]
rs2065553	1.00[CEU][hapmap]
rs2065555	1.00[CEU][hapmap]
rs2404983	1.00[CEU][hapmap]
rs2404990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2746347	0.88[JPT][hapmap]
rs2746355	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4912214	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6588640	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs7542282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551675	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7553623	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2762142	chr1:57082459-57094901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57092400-57098800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:57092600-57098200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:57093600-57094200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:57093600-57098200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:57093600-57098200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:57093800-57096000	Weak transcription	Hela-S3	cervix

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