Variant report

Variant	rs2404990
Chromosome Location	chr1:57095904-57095905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10888995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10888996	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10888997	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10888999	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11206880	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206883	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12032377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073253	0.83[ASN][1000 genomes]
rs2746347	0.88[JPT][hapmap]
rs2746352	0.80[ASN][1000 genomes]
rs2746355	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4912214	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6588640	0.94[JPT][hapmap]
rs7542282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7551675	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7553623	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2519231	chr1:57094847-57096371	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57092400-57098800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:57092600-57098200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:57093600-57098200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:57093600-57098200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:57093800-57096000	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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