Variant report
| Variant | rs11206883 |
|---|---|
| Chromosome Location | chr1:57103219-57103220 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1041604 | 1.00[CEU][hapmap] |
| rs10888995 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10888996 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10888997 | 0.84[ASN][1000 genomes] |
| rs10888999 | 0.82[EUR][1000 genomes] |
| rs10889007 | 0.89[AFR][1000 genomes] |
| rs11206880 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11206887 | 0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs12032377 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12073253 | 0.87[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12126955 | 1.00[CEU][hapmap] |
| rs1777275 | 1.00[CEU][hapmap] |
| rs2065553 | 1.00[CEU][hapmap] |
| rs2065555 | 1.00[CEU][hapmap] |
| rs2404983 | 1.00[CEU][hapmap] |
| rs2404990 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2746340 | 0.85[AFR][1000 genomes] |
| rs2746343 | 0.83[AFR][1000 genomes] |
| rs2746347 | 0.88[JPT][hapmap] |
| rs2746352 | 0.89[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2746355 | 1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2796516 | 0.92[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs2796520 | 0.85[AFR][1000 genomes] |
| rs2796522 | 0.83[AFR][1000 genomes] |
| rs2796528 | 0.85[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs4912214 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6588640 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs72666493 | 0.83[AFR][1000 genomes] |
| rs72666495 | 0.85[AFR][1000 genomes] |
| rs7542282 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7551675 | 0.86[ASN][1000 genomes] |
| rs7553623 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869295 | chr1:56894955-57656562 | Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:57098400-57103800 | Weak transcription | Hela-S3 | cervix |
| 2 | chr1:57103200-57109000 | Weak transcription | Fetal Heart | heart |
