Variant report

Variant	rs4918172
Chromosome Location	chr10:96004048-96004049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11187828	0.92[AFR][1000 genomes]
rs11187830	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12240281	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12248509	0.88[AFR][1000 genomes]
rs12258052	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12262808	0.92[AFR][1000 genomes]
rs12775991	0.87[ASN][1000 genomes]
rs12780278	0.87[ASN][1000 genomes]
rs1408820	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17109869	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1969867	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2274225	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34775698	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34911703	0.87[ASN][1000 genomes]
rs35417689	0.91[ASN][1000 genomes]
rs35606681	0.93[ASN][1000 genomes]
rs36113000	0.90[ASN][1000 genomes]
rs4917450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918182	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918184	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61886339	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7072099	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7081879	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7083628	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7919066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
2	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:95984800-96023800	Weak transcription	Pancreas	Pancrea
5	chr10:95985800-96005800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
7	chr10:95986000-96011400	Weak transcription	Stomach Mucosa	stomach
8	chr10:95988200-96005600	Weak transcription	Fetal Brain Female	brain
9	chr10:95989400-96005800	Weak transcription	Ovary	ovary
10	chr10:95989400-96005800	Weak transcription	Spleen	Spleen
11	chr10:95994600-96005800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:95994600-96045400	Weak transcription	Lung	lung
13	chr10:95994800-96005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:95995000-96005800	Weak transcription	Gastric	stomach
15	chr10:95995200-96005800	Weak transcription	HSMMtube	muscle
16	chr10:95995800-96005800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:95995800-96005800	Weak transcription	Adipose Nuclei	Adipose
18	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
19	chr10:95996000-96005600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:95997800-96005600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:95997800-96005600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:95998000-96005800	Weak transcription	Aorta	Aorta
23	chr10:95999400-96005600	Weak transcription	A549	lung
24	chr10:95999800-96004200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:95999800-96004200	Weak transcription	Fetal Intestine Large	intestine
26	chr10:95999800-96005800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:96000000-96005800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:96000000-96005800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:96000800-96010200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:96001000-96005800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:96001200-96005800	Weak transcription	Fetal Lung	lung
32	chr10:96002000-96006200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:96002200-96006800	Strong transcription	Fetal Muscle Leg	muscle
34	chr10:96002400-96005800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:96002600-96005000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:96002800-96006600	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:96003000-96004200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:96003800-96005800	Weak transcription	Esophagus	oesophagus
39	chr10:96004000-96004200	Enhancers	Psoas Muscle	Psoas
40	chr10:96004000-96006600	Strong transcription	Fetal Stomach	stomach
41	chr10:96004000-96006800	Strong transcription	Fetal Intestine Small	intestine

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