Variant report

Variant	rs1969867
Chromosome Location	chr10:96030458-96030459
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11187828	0.83[AFR][1000 genomes]
rs12240281	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12248509	0.82[AFR][1000 genomes]
rs12258052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12262808	0.83[AFR][1000 genomes]
rs1408820	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830890	0.85[EUR][1000 genomes]
rs1858610	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2077218	0.87[ASN][1000 genomes]
rs2274225	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34775698	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35443777	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3740362	0.85[EUR][1000 genomes]
rs4917450	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918172	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918182	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918184	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918188	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55753709	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886339	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7072099	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7072574	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7075045	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7081879	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083628	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919066	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7919320	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9787457	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9787670	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
3	chr10:95994600-96045400	Weak transcription	Lung	lung
4	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
5	chr10:96004400-96034000	Weak transcription	Fetal Brain Male	brain
6	chr10:96005000-96031200	Weak transcription	Brain Germinal Matrix	brain
7	chr10:96006600-96033600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:96012600-96030600	Weak transcription	Stomach Mucosa	stomach
9	chr10:96012800-96030600	Weak transcription	Spleen	Spleen
10	chr10:96013200-96034000	Weak transcription	Adipose Nuclei	Adipose
11	chr10:96013600-96034000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:96014000-96034000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:96014400-96030800	Weak transcription	Placenta	Placenta
14	chr10:96015000-96070200	Weak transcription	Fetal Brain Female	brain
15	chr10:96016800-96032600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:96017000-96033600	Weak transcription	HSMMtube	muscle
17	chr10:96020800-96039800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:96023600-96038400	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr10:96024000-96030600	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:96024000-96033800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr10:96024200-96031200	Weak transcription	Small Intestine	intestine
22	chr10:96024200-96033600	Weak transcription	Fetal Heart	heart
23	chr10:96025600-96035000	Strong transcription	Fetal Intestine Large	intestine
24	chr10:96026000-96034800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr10:96026600-96030800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:96026600-96033800	Weak transcription	Right Ventricle	heart
27	chr10:96027400-96033800	Strong transcription	Fetal Stomach	stomach
28	chr10:96027600-96030800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:96028000-96034800	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:96028200-96031200	Strong transcription	Aorta	Aorta
31	chr10:96028400-96033800	Weak transcription	A549	lung
32	chr10:96028800-96033200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:96028800-96041200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:96029200-96030600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:96029200-96034000	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:96029600-96031000	Strong transcription	Colonic Mucosa	Colon
37	chr10:96030000-96030600	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:96030200-96030600	Enhancers	Pancreas	Pancrea
39	chr10:96030200-96030800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr10:96030200-96031000	ZNF genes & repeats	Ovary	ovary
41	chr10:96030200-96031800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr10:96030200-96031800	Strong transcription	Fetal Lung	lung
43	chr10:96030200-96032600	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr10:96030400-96031600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:96030400-96037000	Weak transcription	Gastric	stomach

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