Variant report

Variant	rs2274225
Chromosome Location	chr10:96039708-96039709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96039528..96040501-chr10:96203793..96204717,4	K562	blood:
2	chr10:96039567..96040509-chr10:96203701..96204746,3	MCF-7	breast:
3	chr10:96039184..96040471-chr10:96079714..96080676,4	MCF-7	breast:
4	chr10:96033577..96035781-chr10:96037823..96040111,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11187828	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs12240281	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12248509	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs12258052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262808	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs1408820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1830890	0.85[EUR][1000 genomes]
rs1858610	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1969867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2077218	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs34775698	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35443777	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3740362	0.85[EUR][1000 genomes]
rs4917450	0.96[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918172	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918188	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55753709	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61886339	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072574	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7075045	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7081879	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7083628	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7919066	0.96[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7919320	0.96[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9787457	0.96[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9787670	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95994600-96045400	Weak transcription	Lung	lung
2	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
3	chr10:96015000-96070200	Weak transcription	Fetal Brain Female	brain
4	chr10:96020800-96039800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:96028800-96041200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:96031800-96048000	Weak transcription	Brain Germinal Matrix	brain
7	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
8	chr10:96034600-96039800	Weak transcription	Adipose Nuclei	Adipose
9	chr10:96034600-96042000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:96034600-96046200	Weak transcription	Brain Angular Gyrus	brain
11	chr10:96034600-96052600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:96034800-96039800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:96034800-96040600	Weak transcription	A549	lung
14	chr10:96034800-96041400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:96034800-96043600	Weak transcription	Aorta	Aorta
16	chr10:96034800-96043600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:96034800-96045800	Weak transcription	HSMM	muscle
18	chr10:96034800-96048600	Weak transcription	Spleen	Spleen
19	chr10:96035000-96045200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:96035200-96046600	Weak transcription	NH-A	brain
21	chr10:96035400-96043800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:96035400-96052400	Weak transcription	Brain Substantia Nigra	brain
23	chr10:96035600-96047400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr10:96035600-96052400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:96035600-96066800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:96035800-96046600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:96036000-96039800	Weak transcription	Liver	Liver
28	chr10:96036000-96081600	Weak transcription	Left Ventricle	heart
29	chr10:96036200-96041200	Weak transcription	HSMMtube	muscle
30	chr10:96036200-96052000	Weak transcription	Fetal Lung	lung
31	chr10:96037400-96045200	Weak transcription	Fetal Intestine Small	intestine
32	chr10:96037400-96046000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:96037600-96043800	Weak transcription	Colonic Mucosa	Colon
34	chr10:96037600-96043800	Weak transcription	Fetal Stomach	stomach
35	chr10:96037800-96047200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:96037800-96069000	Weak transcription	Gastric	stomach
37	chr10:96038000-96043400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:96038400-96041200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:96038800-96049400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr10:96039000-96040000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:96039200-96040000	Enhancers	Rectal Smooth Muscle	rectum
42	chr10:96039200-96040200	Enhancers	Ovary	ovary
43	chr10:96039200-96043800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:96039200-96046400	Strong transcription	Fetal Muscle Leg	muscle
45	chr10:96039400-96039800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:96039400-96040000	Enhancers	Fetal Heart	heart
47	chr10:96039400-96040200	Enhancers	Pancreas	Pancrea
48	chr10:96039600-96040000	Enhancers	Brain Hippocampus Middle	brain
49	chr10:96039600-96040000	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr10:96039600-96040000	Enhancers	Osteobl	bone

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