Variant report

Variant	rs7081879
Chromosome Location	chr10:96038043-96038044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96033577..96035781-chr10:96037823..96040111,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11187828	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs12240281	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12248509	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs12258052	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12262808	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs1408820	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1830890	0.82[EUR][1000 genomes]
rs1858610	0.80[EUR][1000 genomes]
rs1969867	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2077218	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2274225	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34775698	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35443777	0.83[EUR][1000 genomes]
rs3740362	0.82[EUR][1000 genomes]
rs4917450	0.94[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4918172	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4918182	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918184	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918188	0.83[EUR][1000 genomes]
rs55753709	0.83[EUR][1000 genomes]
rs61886339	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7072099	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7072574	0.83[EUR][1000 genomes]
rs7075045	0.82[EUR][1000 genomes]
rs7083628	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919066	0.94[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919320	0.94[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9787457	0.95[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9787670	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95994600-96045400	Weak transcription	Lung	lung
2	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
3	chr10:96015000-96070200	Weak transcription	Fetal Brain Female	brain
4	chr10:96020800-96039800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:96023600-96038400	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr10:96028800-96041200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:96031600-96039200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:96031800-96048000	Weak transcription	Brain Germinal Matrix	brain
9	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
10	chr10:96034400-96039600	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:96034600-96039800	Weak transcription	Adipose Nuclei	Adipose
12	chr10:96034600-96042000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:96034600-96046200	Weak transcription	Brain Angular Gyrus	brain
14	chr10:96034600-96052600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:96034800-96038800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:96034800-96039600	Weak transcription	Osteobl	bone
17	chr10:96034800-96039800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:96034800-96040600	Weak transcription	A549	lung
19	chr10:96034800-96041400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:96034800-96043600	Weak transcription	Aorta	Aorta
21	chr10:96034800-96043600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:96034800-96045800	Weak transcription	HSMM	muscle
23	chr10:96034800-96048600	Weak transcription	Spleen	Spleen
24	chr10:96035000-96039000	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:96035000-96039200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:96035000-96045200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:96035200-96039200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:96035200-96046600	Weak transcription	NH-A	brain
29	chr10:96035400-96039400	Weak transcription	Fetal Heart	heart
30	chr10:96035400-96043800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:96035400-96052400	Weak transcription	Brain Substantia Nigra	brain
32	chr10:96035600-96047400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr10:96035600-96052400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:96035600-96066800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:96035800-96046600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:96036000-96039800	Weak transcription	Liver	Liver
37	chr10:96036000-96081600	Weak transcription	Left Ventricle	heart
38	chr10:96036200-96041200	Weak transcription	HSMMtube	muscle
39	chr10:96036200-96052000	Weak transcription	Fetal Lung	lung
40	chr10:96036800-96039200	Weak transcription	Ovary	ovary
41	chr10:96037400-96038600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:96037400-96045200	Weak transcription	Fetal Intestine Small	intestine
43	chr10:96037400-96046000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:96037600-96039000	Weak transcription	Placenta	Placenta
45	chr10:96037600-96043800	Weak transcription	Colonic Mucosa	Colon
46	chr10:96037600-96043800	Weak transcription	Fetal Stomach	stomach
47	chr10:96037800-96039200	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:96037800-96039400	Weak transcription	Pancreas	Pancrea
49	chr10:96037800-96039600	Weak transcription	Fetal Intestine Large	intestine
50	chr10:96037800-96047200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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