Variant report

Variant	rs4929931
Chromosome Location	chr11:8746684-8746685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8745341..8747316-chr11:8750121..8752572,2	MCF-7	breast:
2	chr11:8739900..8744386-chr11:8745369..8750564,8	K562	blood:
3	chr11:8709152..8712798-chr11:8746110..8748956,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10160684	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10732515	0.80[AMR][1000 genomes]
rs10743087	0.83[EUR][1000 genomes]
rs10743088	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10743089	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10769952	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1079452	0.84[EUR][1000 genomes]
rs11042058	0.81[EUR][1000 genomes]
rs11042066	0.80[AMR][1000 genomes]
rs2292046	0.80[AMR][1000 genomes]
rs2873297	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3763920	0.80[AMR][1000 genomes]
rs3812762	0.88[EUR][1000 genomes]
rs3844099	0.80[AMR][1000 genomes]
rs3850933	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4929910	0.83[EUR][1000 genomes]
rs4929934	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6484008	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7120004	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7952335	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs905289	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8734800-8746800	Genic enhancers	Fetal Intestine Small	intestine
2	chr11:8735400-8753400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:8735600-8748200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:8738000-8746800	Enhancers	Stomach Mucosa	stomach
6	chr11:8739400-8750200	Weak transcription	Brain Germinal Matrix	brain
7	chr11:8740800-8748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:8741000-8746800	Genic enhancers	Fetal Muscle Leg	muscle
9	chr11:8742200-8746800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:8742200-8749200	Weak transcription	Fetal Brain Male	brain
11	chr11:8742400-8748400	Weak transcription	Aorta	Aorta
12	chr11:8742400-8750200	Weak transcription	Psoas Muscle	Psoas
13	chr11:8742600-8754000	Weak transcription	Hela-S3	cervix
14	chr11:8743400-8746800	Genic enhancers	Duodenum Mucosa	Duodenum
15	chr11:8744000-8747400	Weak transcription	Brain Substantia Nigra	brain
16	chr11:8744000-8748200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:8744000-8752800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:8744000-8754200	Weak transcription	A549	lung
19	chr11:8744200-8757600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:8744400-8748600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:8744400-8750200	Weak transcription	Brain Anterior Caudate	brain
22	chr11:8744400-8750200	Weak transcription	Fetal Brain Female	brain
23	chr11:8744600-8747800	Strong transcription	NHEK	skin
24	chr11:8744600-8748000	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr11:8744600-8748200	Weak transcription	Fetal Thymus	thymus
26	chr11:8744600-8748600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:8744600-8749000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:8744600-8749000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:8744600-8750600	Weak transcription	HepG2	liver
30	chr11:8744800-8747400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:8744800-8748600	Weak transcription	Fetal Heart	heart
32	chr11:8744800-8748600	Weak transcription	Ovary	ovary
33	chr11:8744800-8751200	Weak transcription	Colonic Mucosa	Colon
34	chr11:8744800-8753000	Weak transcription	Adipose Nuclei	Adipose
35	chr11:8744800-8753400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:8745000-8747400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:8745000-8747800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:8745000-8747800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:8745000-8749400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:8745000-8754400	Weak transcription	Small Intestine	intestine
41	chr11:8745200-8749200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:8745200-8749600	Strong transcription	HSMMtube	muscle
43	chr11:8745400-8747200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:8745400-8747400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:8745400-8747800	Weak transcription	Right Ventricle	heart
46	chr11:8745400-8748000	Strong transcription	Placenta	Placenta
47	chr11:8745400-8748000	Strong transcription	Fetal Stomach	stomach
48	chr11:8745400-8748200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:8745400-8748400	Strong transcription	HSMM	muscle
50	chr11:8745400-8750200	Weak transcription	Brain Hippocampus Middle	brain

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