Variant report

Variant	rs11042058
Chromosome Location	chr11:8763815-8763816
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10160684	0.90[CEU][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10500705	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10500707	0.85[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10732515	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs10734636	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10734637	0.91[EUR][1000 genomes]
rs10743087	0.95[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs10743088	0.95[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs10743089	0.95[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs10769952	0.84[EUR][1000 genomes]
rs10769953	1.00[CEU][hapmap];0.85[GIH][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10769954	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10769959	0.95[CEU][hapmap]
rs1079452	0.95[CEU][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs11042066	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs11042068	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042077	0.84[GIH][hapmap];0.85[TSI][hapmap]
rs11603335	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2173999	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2292045	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2292046	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs2873297	0.95[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs34090393	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34524863	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34599227	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35098775	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35670750	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3763920	0.95[CEU][hapmap];0.87[TSI][hapmap]
rs3812762	0.90[CEU][hapmap];0.80[CHD][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3842991	0.86[EUR][1000 genomes]
rs3844099	0.80[EUR][1000 genomes]
rs3844100	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3850933	0.83[EUR][1000 genomes]
rs3862352	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4929910	0.95[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs4929915	0.84[LWK][hapmap];0.95[MKK][hapmap];0.93[YRI][hapmap]
rs4929931	0.81[EUR][1000 genomes]
rs4929934	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4929936	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6484008	0.86[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs6484425	0.85[EUR][1000 genomes]
rs7120004	0.86[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs7934519	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7952335	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs905289	0.91[CEU][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8752600-8769800	Weak transcription	Colonic Mucosa	Colon
4	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:8754600-8771000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:8755200-8767000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:8755200-8771600	Weak transcription	Hela-S3	cervix
10	chr11:8755200-8774200	Weak transcription	Brain Angular Gyrus	brain
11	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:8755400-8770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:8755600-8768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:8755600-8777200	Weak transcription	Psoas Muscle	Psoas
15	chr11:8755800-8764000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:8755800-8767000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:8755800-8770200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:8756000-8765200	Weak transcription	HMEC	breast
20	chr11:8756000-8768400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:8756000-8768400	Weak transcription	Stomach Mucosa	stomach
22	chr11:8756000-8776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:8756200-8767800	Weak transcription	Small Intestine	intestine
24	chr11:8757400-8766800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:8757400-8767200	Weak transcription	Fetal Intestine Large	intestine
26	chr11:8757400-8777400	Weak transcription	Adipose Nuclei	Adipose
27	chr11:8757600-8767000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:8757800-8777800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:8758000-8764000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:8758400-8767200	Weak transcription	NH-A	brain
31	chr11:8758400-8768200	Weak transcription	HepG2	liver
32	chr11:8758400-8770600	Weak transcription	Lung	lung
33	chr11:8758600-8766400	Weak transcription	Left Ventricle	heart
34	chr11:8758600-8767000	Weak transcription	HSMMtube	muscle
35	chr11:8758600-8770800	Weak transcription	Esophagus	oesophagus
36	chr11:8759200-8764200	Strong transcription	Fetal Muscle Trunk	muscle
37	chr11:8759400-8764400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:8759600-8764200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:8759800-8767600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:8759800-8775600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:8760200-8766800	Weak transcription	Fetal Lung	lung
42	chr11:8760800-8766400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:8760800-8769000	Weak transcription	Liver	Liver
44	chr11:8761000-8767200	Weak transcription	Pancreas	Pancrea
45	chr11:8761200-8764000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:8761200-8768800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:8761400-8769400	Weak transcription	NHLF	lung
48	chr11:8761400-8771800	Weak transcription	Brain Substantia Nigra	brain
49	chr11:8762000-8764000	Strong transcription	Placenta	Placenta
50	chr11:8762000-8764400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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