Variant report

Variant	rs35670750
Chromosome Location	chr11:8782444-8782445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:8782387-8782608	HepG2	liver:	n/a	chr11:8782479-8782490 chr11:8782479-8782492

Variant related genes	Relation type
ST5	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10160684	0.87[EUR][1000 genomes]
rs10500705	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10500707	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10732515	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10734636	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10734637	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10743087	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10743088	0.87[EUR][1000 genomes]
rs10743089	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10769952	0.91[EUR][1000 genomes]
rs10769953	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10769954	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10769959	0.84[EUR][1000 genomes]
rs1079452	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11042058	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042066	0.86[EUR][1000 genomes]
rs11042068	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11603335	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2173999	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2292045	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2292046	0.88[EUR][1000 genomes]
rs2873297	0.87[EUR][1000 genomes]
rs34090393	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34524863	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34599227	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35098775	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3763920	0.87[EUR][1000 genomes]
rs3812762	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3842991	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3844099	0.88[EUR][1000 genomes]
rs3844100	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3850933	0.86[EUR][1000 genomes]
rs3862352	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4929910	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4929915	0.84[AFR][1000 genomes]
rs4929934	0.91[EUR][1000 genomes]
rs4929936	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6484425	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7120004	0.84[EUR][1000 genomes]
rs7934519	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8772200-8782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:8772400-8782800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:8772400-8787000	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:8772400-8788400	Weak transcription	Hela-S3	cervix
6	chr11:8775400-8782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:8777400-8783400	Enhancers	NHLF	lung
8	chr11:8777400-8784000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:8777400-8784200	Enhancers	Fetal Intestine Large	intestine
10	chr11:8777400-8784200	Enhancers	Left Ventricle	heart
11	chr11:8777400-8795800	Enhancers	Rectal Smooth Muscle	rectum
12	chr11:8777600-8787800	Weak transcription	Esophagus	oesophagus
13	chr11:8777800-8785400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:8778000-8784000	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:8778400-8782600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr11:8779000-8783000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:8779000-8784400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:8779200-8784200	Genic enhancers	Fetal Stomach	stomach
19	chr11:8779200-8785000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:8779200-8785000	Weak transcription	HSMMtube	muscle
21	chr11:8779200-8786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:8779400-8786600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:8779400-8787000	Weak transcription	NHEK	skin
24	chr11:8779600-8784000	Enhancers	Right Ventricle	heart
25	chr11:8779600-8786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:8779600-8799600	Weak transcription	Fetal Brain Male	brain
27	chr11:8779800-8784000	Enhancers	Spleen	Spleen
28	chr11:8779800-8784800	Weak transcription	HSMM	muscle
29	chr11:8780000-8782600	Weak transcription	Small Intestine	intestine
30	chr11:8780000-8782600	Weak transcription	NH-A	brain
31	chr11:8780000-8786600	Weak transcription	HMEC	breast
32	chr11:8780000-8792400	Weak transcription	HepG2	liver
33	chr11:8780200-8783000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:8780200-8784000	Enhancers	Right Atrium	heart
35	chr11:8780400-8783000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr11:8780400-8784000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:8780400-8784400	Enhancers	Ovary	ovary
38	chr11:8780600-8783400	Enhancers	Brain Anterior Caudate	brain
39	chr11:8780600-8784000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:8780800-8784000	Enhancers	Pancreas	Pancrea
41	chr11:8781000-8783000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:8781000-8783200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:8781000-8783400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr11:8781000-8783800	Enhancers	Fetal Kidney	kidney
45	chr11:8781000-8783800	Enhancers	Placenta	Placenta
46	chr11:8781000-8786800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:8781200-8783600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:8781200-8784000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:8781200-8784000	Enhancers	Stomach Mucosa	stomach
50	chr11:8781400-8782600	Weak transcription	Fetal Heart	heart

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