Variant report

Variant	rs10769954
Chromosome Location	chr11:8783713-8783714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10160684	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500705	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10500707	0.90[EUR][1000 genomes]
rs10732515	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10734636	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10734637	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743087	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743088	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10743089	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769952	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769953	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769959	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1079452	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042058	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042066	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11042068	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11603335	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2173999	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2292045	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2292046	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2873297	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34090393	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34524863	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34599227	0.87[EUR][1000 genomes]
rs35098775	0.86[EUR][1000 genomes]
rs35670750	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3763920	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3812762	0.82[EUR][1000 genomes]
rs3842991	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3844099	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3844100	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3850933	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3862352	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4929910	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4929934	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4929936	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6484425	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7120004	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7934519	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952335	0.83[AMR][1000 genomes]
rs905289	0.83[AMR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8772400-8787000	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:8772400-8788400	Weak transcription	Hela-S3	cervix
3	chr11:8777400-8784000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:8777400-8784200	Enhancers	Fetal Intestine Large	intestine
5	chr11:8777400-8784200	Enhancers	Left Ventricle	heart
6	chr11:8777400-8795800	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:8777600-8787800	Weak transcription	Esophagus	oesophagus
8	chr11:8777800-8785400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:8778000-8784000	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:8779000-8784400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:8779200-8784200	Genic enhancers	Fetal Stomach	stomach
12	chr11:8779200-8785000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:8779200-8785000	Weak transcription	HSMMtube	muscle
14	chr11:8779200-8786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:8779400-8786600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:8779400-8787000	Weak transcription	NHEK	skin
17	chr11:8779600-8784000	Enhancers	Right Ventricle	heart
18	chr11:8779600-8786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:8779600-8799600	Weak transcription	Fetal Brain Male	brain
20	chr11:8779800-8784000	Enhancers	Spleen	Spleen
21	chr11:8779800-8784800	Weak transcription	HSMM	muscle
22	chr11:8780000-8786600	Weak transcription	HMEC	breast
23	chr11:8780000-8792400	Weak transcription	HepG2	liver
24	chr11:8780200-8784000	Enhancers	Right Atrium	heart
25	chr11:8780400-8784000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:8780400-8784400	Enhancers	Ovary	ovary
27	chr11:8780600-8784000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:8780800-8784000	Enhancers	Pancreas	Pancrea
29	chr11:8781000-8783800	Enhancers	Fetal Kidney	kidney
30	chr11:8781000-8783800	Enhancers	Placenta	Placenta
31	chr11:8781000-8786800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:8781200-8784000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr11:8781200-8784000	Enhancers	Stomach Mucosa	stomach
34	chr11:8781400-8786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:8781400-8787800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:8781400-8794600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr11:8781600-8785800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:8781600-8786600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:8781800-8783800	Enhancers	Fetal Intestine Small	intestine
40	chr11:8781800-8784000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:8781800-8784200	Enhancers	Fetal Muscle Leg	muscle
42	chr11:8781800-8786600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:8781800-8786600	Weak transcription	NHDF-Ad	bronchial
44	chr11:8782000-8787200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:8782000-8791600	Enhancers	Colon Smooth Muscle	Colon
46	chr11:8782200-8784000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:8782200-8786800	Weak transcription	Aorta	Aorta
48	chr11:8782400-8784000	Enhancers	Brain Substantia Nigra	brain
49	chr11:8782400-8784000	Enhancers	Lung	lung
50	chr11:8782400-8785800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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