Variant report

Variant	rs34524863
Chromosome Location	chr11:8777408-8777409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8775891..8778545-chr11:8784812..8786511,2	K562	blood:
2	chr11:8776493..8778441-chr11:8825146..8827348,2	MCF-7	breast:
3	chr11:8702183..8705528-chr11:8775853..8778688,3	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160684	0.87[EUR][1000 genomes]
rs10500705	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10500707	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10732515	0.88[EUR][1000 genomes]
rs10734636	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10734637	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10743087	0.90[EUR][1000 genomes]
rs10743088	0.87[EUR][1000 genomes]
rs10743089	0.90[EUR][1000 genomes]
rs10769952	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10769953	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10769954	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10769959	0.85[EUR][1000 genomes]
rs1079452	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11042058	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042066	0.87[EUR][1000 genomes]
rs11042068	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11603335	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2173999	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2292045	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292046	0.88[EUR][1000 genomes]
rs2873297	0.87[EUR][1000 genomes]
rs34090393	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34599227	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35098775	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35670750	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3763920	0.86[EUR][1000 genomes]
rs3812762	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3842991	0.93[EUR][1000 genomes]
rs3844099	0.87[EUR][1000 genomes]
rs3844100	0.93[EUR][1000 genomes]
rs3850933	0.85[EUR][1000 genomes]
rs3862352	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4929910	0.90[EUR][1000 genomes]
rs4929934	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4929936	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6484425	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7120004	0.84[EUR][1000 genomes]
rs7934519	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:8757800-8777800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:8762000-8778200	Weak transcription	Aorta	Aorta
8	chr11:8762800-8778000	Weak transcription	Ovary	ovary
9	chr11:8763400-8781000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:8767000-8779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:8769200-8778800	Weak transcription	Fetal Kidney	kidney
12	chr11:8769400-8781000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:8771200-8778000	Weak transcription	Fetal Heart	heart
14	chr11:8771200-8778200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:8771200-8778200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:8771200-8778200	Weak transcription	HepG2	liver
17	chr11:8771200-8778800	Weak transcription	Stomach Mucosa	stomach
18	chr11:8771400-8778000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:8771400-8779600	Weak transcription	Gastric	stomach
20	chr11:8771600-8777800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:8772000-8778000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:8772200-8778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:8772200-8781200	Weak transcription	Lung	lung
24	chr11:8772200-8782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:8772400-8778000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:8772400-8778000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:8772400-8778000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:8772400-8778000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:8772400-8778200	Weak transcription	Spleen	Spleen
30	chr11:8772400-8778800	Weak transcription	NHEK	skin
31	chr11:8772400-8780400	Weak transcription	Placenta	Placenta
32	chr11:8772400-8782800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:8772400-8787000	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:8772400-8788400	Weak transcription	Hela-S3	cervix
35	chr11:8772600-8778400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:8774400-8777800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:8775400-8780000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:8775400-8782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:8775600-8778600	Weak transcription	HMEC	breast
40	chr11:8776000-8777600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:8776000-8779400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:8776000-8781800	Enhancers	NHDF-Ad	bronchial
43	chr11:8776200-8778800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:8776400-8777600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:8776600-8777800	Strong transcription	Liver	Liver
46	chr11:8776600-8779000	Enhancers	Right Atrium	heart
47	chr11:8777000-8779400	Enhancers	Osteobl	bone
48	chr11:8777000-8780200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:8777000-8781200	Weak transcription	Fetal Lung	lung
50	chr11:8777200-8778400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links