Variant report

Variant	rs11603335
Chromosome Location	chr11:8809844-8809845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160684	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10500705	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10500707	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10732515	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10734636	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10734637	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10743087	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10743088	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10743089	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769952	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769953	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769954	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769959	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1079452	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042058	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042066	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042068	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2173999	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2292045	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2292046	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2873297	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34090393	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34524863	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34599227	0.89[EUR][1000 genomes]
rs35098775	0.83[EUR][1000 genomes]
rs35670750	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3751071	0.84[ASN][1000 genomes]
rs3763920	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3842991	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3844099	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3844100	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3850933	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862352	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4929910	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4929934	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4929936	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6484425	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7120004	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7934519	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv553447	chr11:8792622-8825966	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8791400-8810400	Weak transcription	Hela-S3	cervix
2	chr11:8797800-8827200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:8798200-8810000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:8800600-8811400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:8800800-8822400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:8800800-8825800	Weak transcription	Brain Angular Gyrus	brain
7	chr11:8800800-8827400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:8801000-8815600	Weak transcription	NHDF-Ad	bronchial
9	chr11:8801600-8820000	Weak transcription	HSMMtube	muscle
10	chr11:8801600-8827400	Weak transcription	Esophagus	oesophagus
11	chr11:8801800-8814200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:8802000-8816000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:8802200-8819200	Weak transcription	NH-A	brain
14	chr11:8802400-8810600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:8802800-8816000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:8803000-8815800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:8803000-8820600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:8804400-8811000	Enhancers	Colon Smooth Muscle	Colon
19	chr11:8805800-8811400	Weak transcription	Aorta	Aorta
20	chr11:8806000-8810800	Enhancers	Right Ventricle	heart
21	chr11:8806400-8810800	Enhancers	Fetal Heart	heart
22	chr11:8807000-8811800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr11:8807200-8811600	Weak transcription	Fetal Intestine Large	intestine
24	chr11:8807400-8811400	Weak transcription	Lung	lung
25	chr11:8807600-8814000	Weak transcription	Fetal Lung	lung
26	chr11:8807600-8815200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:8807800-8810200	Weak transcription	Small Intestine	intestine
28	chr11:8807800-8811000	Weak transcription	Liver	Liver
29	chr11:8807800-8814200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:8808000-8810400	Enhancers	Ovary	ovary
31	chr11:8808000-8810600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:8808200-8810000	Weak transcription	Gastric	stomach
33	chr11:8808200-8813200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr11:8808200-8815800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:8808400-8812000	Weak transcription	Fetal Intestine Small	intestine
36	chr11:8808600-8810800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:8808600-8811400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:8808600-8814400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:8808600-8819400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:8808800-8816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:8808800-8816200	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:8809000-8810400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:8809000-8810400	Enhancers	Spleen	Spleen
44	chr11:8809000-8812400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:8809000-8813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:8809000-8814000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:8809000-8815800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:8809000-8816000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:8809000-8816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:8809000-8830200	Weak transcription	Fetal Brain Male	brain

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