Variant report

Variant	rs7934519
Chromosome Location	chr11:8791981-8791982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8713389..8715952-chr11:8790656..8792768,2	K562	blood:
2	chr11:8708263..8710064-chr11:8790794..8793308,2	MCF-7	breast:
3	chr11:8709572..8711665-chr11:8791796..8793909,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254665	Chromatin interaction
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10160684	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10500705	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10500707	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10732515	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10734636	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10734637	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743087	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10743088	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743089	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769952	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769954	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769959	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1079452	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042058	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042066	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11042068	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11603335	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2173999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292045	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2292046	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2873297	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34090393	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34524863	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34599227	0.88[EUR][1000 genomes]
rs35098775	0.88[EUR][1000 genomes]
rs35670750	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3763920	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3812762	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs3842991	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3844099	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3844100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3850933	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3862352	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4929910	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4929934	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4929936	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484008	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs6484425	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7120004	0.85[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7952335	0.84[CEU][hapmap];0.85[AMR][1000 genomes]
rs905289	0.90[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8777400-8795800	Enhancers	Rectal Smooth Muscle	rectum
2	chr11:8779600-8799600	Weak transcription	Fetal Brain Male	brain
3	chr11:8780000-8792400	Weak transcription	HepG2	liver
4	chr11:8781400-8794600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:8784000-8794200	Weak transcription	Colonic Mucosa	Colon
6	chr11:8785200-8799400	Enhancers	Fetal Heart	heart
7	chr11:8786400-8794200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:8786600-8795400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:8786600-8795400	Enhancers	Stomach Mucosa	stomach
10	chr11:8786600-8798000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:8786600-8803000	Enhancers	Ovary	ovary
12	chr11:8786800-8792400	Enhancers	HSMM	muscle
13	chr11:8787000-8797800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:8787600-8795000	Weak transcription	Fetal Intestine Large	intestine
15	chr11:8788200-8792400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:8788200-8794200	Weak transcription	Gastric	stomach
17	chr11:8788200-8797000	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:8788600-8792600	Weak transcription	Aorta	Aorta
19	chr11:8788600-8799600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:8788800-8792800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:8788800-8794200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:8788800-8794200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:8788800-8794200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:8788800-8801400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:8788800-8808400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:8789000-8795400	Enhancers	HMEC	breast
27	chr11:8789000-8801200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:8789400-8794800	Weak transcription	Brain Anterior Caudate	brain
29	chr11:8789400-8797000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:8789400-8797400	Weak transcription	Brain Substantia Nigra	brain
31	chr11:8789400-8807600	Weak transcription	Fetal Kidney	kidney
32	chr11:8789600-8799400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:8789600-8805800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:8790200-8793400	Weak transcription	Fetal Intestine Small	intestine
35	chr11:8790400-8792400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:8790400-8793800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:8790400-8794000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:8790400-8794200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:8790400-8795600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:8790400-8795800	Weak transcription	Small Intestine	intestine
41	chr11:8790600-8794400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:8790600-8796000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:8790800-8792400	Weak transcription	Liver	Liver
44	chr11:8790800-8792400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:8790800-8792600	Strong transcription	Fetal Stomach	stomach
46	chr11:8790800-8792600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:8790800-8792800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:8790800-8792800	Weak transcription	HUVEC	blood vessel
49	chr11:8790800-8793800	Weak transcription	Placenta	Placenta
50	chr11:8790800-8794000	Weak transcription	Spleen	Spleen

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