Variant report

Variant	rs10734637
Chromosome Location	chr11:8788225-8788226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr11:8787832-8788539	H1-hESC	embryonic stem cell:	n/a	n/a
2	ATF1	chr11:8788102-8788368	K562	blood:	n/a	n/a
3	CREB1	chr11:8788055-8788416	GM12878	blood:	n/a	n/a
4	CREB1	chr11:8787989-8788523	H1-hESC	embryonic stem cell:	n/a	n/a
5	CREB1	chr11:8788006-8788510	HepG2	liver:	n/a	n/a
6	HDAC2	chr11:8787897-8788454	H1-hESC	embryonic stem cell:	n/a	n/a
7	JUND	chr11:8788037-8788492	H1-hESC	embryonic stem cell:	n/a	chr11:8788433-8788443 chr11:8788432-8788444 chr11:8788433-8788443 chr11:8788434-8788442 chr11:8788433-8788443
8	CREB1	chr11:8787930-8788618	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8708222..8712147-chr11:8785051..8789387,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255159	TF binding region
ST5	TF binding region
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10160684	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500705	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10500707	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10732515	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10734636	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10743087	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743088	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10743089	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769952	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769953	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769954	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769956	0.96[AFR][1000 genomes]
rs10769959	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1079452	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042058	0.91[EUR][1000 genomes]
rs11042066	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042068	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11603335	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2173999	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2292045	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2292046	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2873297	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34090393	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34524863	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34599227	0.91[EUR][1000 genomes]
rs35098775	0.86[EUR][1000 genomes]
rs35670750	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3751071	0.80[ASN][1000 genomes]
rs3763920	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812762	0.82[EUR][1000 genomes]
rs3842991	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3844099	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3844100	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3850933	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3862352	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4929910	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929934	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929936	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6484425	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7120004	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7934519	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7952335	0.81[AMR][1000 genomes]
rs905289	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8772400-8788400	Weak transcription	Hela-S3	cervix
2	chr11:8777400-8795800	Enhancers	Rectal Smooth Muscle	rectum
3	chr11:8779600-8799600	Weak transcription	Fetal Brain Male	brain
4	chr11:8780000-8792400	Weak transcription	HepG2	liver
5	chr11:8781400-8794600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:8782000-8791600	Enhancers	Colon Smooth Muscle	Colon
7	chr11:8783200-8790000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:8783800-8788400	Weak transcription	Fetal Lung	lung
9	chr11:8783800-8788800	Weak transcription	Fetal Kidney	kidney
10	chr11:8784000-8788400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:8784000-8788600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:8784000-8790200	Weak transcription	Small Intestine	intestine
13	chr11:8784000-8794200	Weak transcription	Colonic Mucosa	Colon
14	chr11:8785000-8788600	Enhancers	HSMMtube	muscle
15	chr11:8785000-8791400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:8785200-8799400	Enhancers	Fetal Heart	heart
17	chr11:8785400-8788400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:8786000-8788800	Enhancers	Pancreas	Pancrea
19	chr11:8786200-8788400	Weak transcription	Placenta	Placenta
20	chr11:8786400-8794200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:8786600-8788400	Enhancers	HMEC	breast
22	chr11:8786600-8788400	Enhancers	Osteobl	bone
23	chr11:8786600-8788600	Enhancers	NH-A	brain
24	chr11:8786600-8789000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr11:8786600-8789000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:8786600-8789200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr11:8786600-8789400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr11:8786600-8789600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr11:8786600-8789800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:8786600-8790400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:8786600-8790400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:8786600-8791200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr11:8786600-8791200	Enhancers	Placenta Amnion	Placenta Amnion
34	chr11:8786600-8791400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:8786600-8791400	Enhancers	Right Ventricle	heart
36	chr11:8786600-8791600	Enhancers	Left Ventricle	heart
37	chr11:8786600-8791800	Enhancers	NHDF-Ad	bronchial
38	chr11:8786600-8791800	Enhancers	NHLF	lung
39	chr11:8786600-8795400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:8786600-8795400	Enhancers	Stomach Mucosa	stomach
41	chr11:8786600-8798000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:8786600-8803000	Enhancers	Ovary	ovary
43	chr11:8786800-8788800	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:8786800-8788800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:8786800-8788800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr11:8786800-8788800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr11:8786800-8789000	Genic enhancers	Fetal Stomach	stomach
48	chr11:8786800-8789400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:8786800-8789600	Enhancers	Brain Cingulate Gyrus	brain
50	chr11:8786800-8790800	Enhancers	HUVEC	blood vessel

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