Variant report

Variant	rs10160684
Chromosome Location	chr11:8775419-8775420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8770175..8772021-chr11:8774328..8776662,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10500705	0.90[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs10500707	0.90[CEU][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs10732515	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10734636	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10734637	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10743087	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743088	0.95[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10743089	0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769952	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769953	0.90[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769954	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769959	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1079452	0.95[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042058	0.90[CEU][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042066	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042068	0.90[CEU][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs11042077	0.84[TSI][hapmap]
rs11603335	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2173999	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2292045	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs2292046	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2873297	0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34090393	0.83[EUR][1000 genomes]
rs34524863	0.87[EUR][1000 genomes]
rs35098775	0.82[EUR][1000 genomes]
rs35670750	0.87[EUR][1000 genomes]
rs3763920	0.95[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3812762	0.85[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs3842991	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3844099	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3844100	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3850933	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3862352	0.81[EUR][1000 genomes]
rs4929910	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929931	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4929934	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929936	0.90[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6484008	0.90[CEU][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6484425	0.83[ASN][1000 genomes]
rs7120004	0.90[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7934519	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7952335	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs905289	0.90[CEU][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:8755600-8777200	Weak transcription	Psoas Muscle	Psoas
6	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:8756000-8776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:8757400-8777400	Weak transcription	Adipose Nuclei	Adipose
9	chr11:8757800-8777800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:8759800-8775600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:8762000-8778200	Weak transcription	Aorta	Aorta
12	chr11:8762800-8778000	Weak transcription	Ovary	ovary
13	chr11:8763400-8781000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:8767000-8779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:8767800-8777400	Weak transcription	NH-A	brain
16	chr11:8769000-8776000	Weak transcription	NHDF-Ad	bronchial
17	chr11:8769200-8778800	Weak transcription	Fetal Kidney	kidney
18	chr11:8769400-8781000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:8771000-8777400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:8771200-8776600	Weak transcription	Esophagus	oesophagus
21	chr11:8771200-8777400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:8771200-8778000	Weak transcription	Fetal Heart	heart
23	chr11:8771200-8778200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:8771200-8778200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:8771200-8778200	Weak transcription	HepG2	liver
26	chr11:8771200-8778800	Weak transcription	Stomach Mucosa	stomach
27	chr11:8771400-8777000	Weak transcription	Osteobl	bone
28	chr11:8771400-8777400	Weak transcription	Fetal Intestine Small	intestine
29	chr11:8771400-8777400	Weak transcription	Pancreas	Pancrea
30	chr11:8771400-8778000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:8771400-8779600	Weak transcription	Gastric	stomach
32	chr11:8771600-8777800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:8772000-8775800	Weak transcription	HSMM	muscle
34	chr11:8772000-8776400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:8772000-8776600	Weak transcription	Right Atrium	heart
36	chr11:8772000-8777400	Weak transcription	HSMMtube	muscle
37	chr11:8772000-8778000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:8772200-8776400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:8772200-8778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:8772200-8781200	Weak transcription	Lung	lung
41	chr11:8772200-8782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:8772400-8776200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:8772400-8776600	Weak transcription	Liver	Liver
44	chr11:8772400-8777000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:8772400-8777200	Weak transcription	Right Ventricle	heart
46	chr11:8772400-8777400	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:8772400-8777400	Weak transcription	NHLF	lung
48	chr11:8772400-8778000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:8772400-8778000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:8772400-8778000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links