Variant report

Variant	rs6484008
Chromosome Location	chr11:8754148-8754149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10160684	0.90[CEU][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10500705	0.86[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs10500707	0.86[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs10732515	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs10743087	0.91[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs10743088	0.91[CEU][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10743089	0.91[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10769952	0.84[EUR][1000 genomes]
rs10769953	0.86[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes]
rs10769959	0.91[CEU][hapmap]
rs1079452	0.91[CEU][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11042058	0.86[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs11042066	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs11042068	0.86[CEU][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs2173999	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs2292045	0.86[CEU][hapmap]
rs2292046	0.91[CEU][hapmap]
rs2873297	0.91[CEU][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3763920	0.91[CEU][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap]
rs3812762	0.95[CEU][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3844100	0.85[CEU][hapmap];0.80[JPT][hapmap]
rs3850933	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4929910	0.91[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs4929931	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4929934	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs4929936	0.86[CEU][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap]
rs7120004	0.91[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs7934519	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs7952335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs905289	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6484008	RPL27A	cis	cerebellum	SCAN
rs6484008	MRPL17	cis	cerebellum	SCAN
rs6484008	TMEM9B	cis	parietal	SCAN
rs6484008	OR51F1	cis	parietal	SCAN
rs6484008	STK33	cis	cerebellum	SCAN
rs6484008	RPL27A	cis	parietal	SCAN

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:8744000-8754200	Weak transcription	A549	lung
3	chr11:8744200-8757600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:8745000-8754400	Weak transcription	Small Intestine	intestine
5	chr11:8746000-8754200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:8746200-8757400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:8746400-8757200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:8746600-8757200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:8747800-8756400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:8748800-8754600	Weak transcription	Fetal Thymus	thymus
12	chr11:8749000-8754200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:8749400-8754400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:8749400-8754600	Weak transcription	Fetal Kidney	kidney
15	chr11:8750800-8760200	Weak transcription	Fetal Brain Male	brain
16	chr11:8752000-8755800	Enhancers	Right Atrium	heart
17	chr11:8752400-8755200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:8752400-8755400	Weak transcription	K562	blood
19	chr11:8752600-8754600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:8752600-8755800	Enhancers	Right Ventricle	heart
21	chr11:8752600-8756000	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:8752600-8769800	Weak transcription	Colonic Mucosa	Colon
23	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:8752800-8755600	Enhancers	Colon Smooth Muscle	Colon
25	chr11:8752800-8755600	Enhancers	HSMMtube	muscle
26	chr11:8752800-8755800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:8752800-8758600	Enhancers	Left Ventricle	heart
28	chr11:8753000-8754200	Enhancers	HSMM	muscle
29	chr11:8753000-8754400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:8753000-8755200	Enhancers	Adipose Nuclei	Adipose
31	chr11:8753000-8755200	Enhancers	Aorta	Aorta
32	chr11:8753000-8755600	Genic enhancers	Fetal Muscle Leg	muscle
33	chr11:8753000-8755600	Enhancers	Lung	lung
34	chr11:8753000-8755600	Enhancers	Pancreas	Pancrea
35	chr11:8753000-8755600	Enhancers	Osteobl	bone
36	chr11:8753000-8755800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:8753000-8755800	Enhancers	Ovary	ovary
38	chr11:8753000-8755800	Enhancers	Rectal Smooth Muscle	rectum
39	chr11:8753000-8755800	Genic enhancers	NHLF	lung
40	chr11:8753000-8756000	Enhancers	GM12878-XiMat	blood
41	chr11:8753000-8756200	Enhancers	Spleen	Spleen
42	chr11:8753000-8756400	Enhancers	Fetal Heart	heart
43	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:8753200-8754400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:8753200-8754800	Genic enhancers	Fetal Stomach	stomach
46	chr11:8753200-8755600	Enhancers	Esophagus	oesophagus
47	chr11:8753200-8755800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:8753200-8755800	Enhancers	Brain Substantia Nigra	brain
49	chr11:8753200-8756000	Enhancers	NHDF-Ad	bronchial
50	chr11:8753200-8759600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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