Variant report

Variant	rs4941570
Chromosome Location	chr13:47439371-47439372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1410657	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs1928040	0.91[CEU][hapmap]
rs2770304	0.81[ASN][1000 genomes]
rs4941573	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4941574	0.95[EUR][1000 genomes]
rs4941575	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4942582	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs4942584	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6311	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs6313	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs6561336	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9316236	0.95[EUR][1000 genomes]
rs9526246	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9534504	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9534513	0.83[CEU][hapmap]
rs972979	0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs985933	0.85[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs985934	0.85[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv900063	chr13:47423291-47464857	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47405600-47439400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:47409400-47455200	Weak transcription	Aorta	Aorta
3	chr13:47427800-47440000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:47434400-47439600	Weak transcription	Fetal Intestine Small	intestine
5	chr13:47434400-47439800	Weak transcription	Fetal Intestine Large	intestine
6	chr13:47435800-47439400	Weak transcription	Fetal Lung	lung
7	chr13:47437000-47440200	Weak transcription	GM12878-XiMat	blood
8	chr13:47437600-47441000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr13:47438000-47439600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:47438600-47440000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr13:47438600-47440600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:47438800-47440600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:47438800-47440600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:47439000-47440000	Weak transcription	NHDF-Ad	bronchial
15	chr13:47439200-47440200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:47439200-47440600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr13:47439200-47440600	Enhancers	HMEC	breast
18	chr13:47439200-47440800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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