Variant report

Variant	rs9316236
Chromosome Location	chr13:47464268-47464269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2070040	0.83[ASN][1000 genomes]
rs4941570	0.95[EUR][1000 genomes]
rs4941573	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4941574	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4941575	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4942584	0.98[EUR][1000 genomes]
rs6311	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6313	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6561336	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs731245	0.80[EUR][1000 genomes]
rs9526246	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9534504	0.96[EUR][1000 genomes]
rs9534510	0.82[ASN][1000 genomes]
rs9534511	0.83[ASN][1000 genomes]
rs9534515	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv900063	chr13:47423291-47464857	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47448600-47467200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:47451600-47464400	Weak transcription	Fetal Stomach	stomach
3	chr13:47458200-47467600	Weak transcription	Aorta	Aorta
4	chr13:47459400-47467400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr13:47461400-47465600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:47462000-47465600	Weak transcription	Fetal Brain Female	brain
7	chr13:47464000-47466400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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