Variant report

Variant	rs9534504
Chromosome Location	chr13:47442725-47442726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1410657	0.86[ASN][1000 genomes]
rs2770304	0.82[ASN][1000 genomes]
rs4941570	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4941573	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4941574	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4941575	0.88[EUR][1000 genomes]
rs4942582	0.85[ASN][1000 genomes]
rs4942584	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6311	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6313	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6561336	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9316236	0.96[EUR][1000 genomes]
rs9526246	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs972979	0.86[ASN][1000 genomes]
rs985933	0.88[ASN][1000 genomes]
rs985934	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv900063	chr13:47423291-47464857	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47409400-47455200	Weak transcription	Aorta	Aorta
2	chr13:47439400-47443000	Enhancers	Fetal Lung	lung
3	chr13:47440400-47445000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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