Variant report

Variant	rs4942584
Chromosome Location	chr13:47453197-47453198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1410657	0.89[ASN][1000 genomes]
rs2770304	0.81[ASN][1000 genomes]
rs4941570	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4941573	0.98[EUR][1000 genomes]
rs4941574	0.98[EUR][1000 genomes]
rs4941575	0.91[EUR][1000 genomes]
rs4942582	0.90[ASN][1000 genomes]
rs6311	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6313	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6561336	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9316236	0.98[EUR][1000 genomes]
rs9526246	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9534504	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs972979	0.89[ASN][1000 genomes]
rs985933	0.87[ASN][1000 genomes]
rs985934	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv900063	chr13:47423291-47464857	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv561583	chr13:47452038-47462800	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47409400-47455200	Weak transcription	Aorta	Aorta
2	chr13:47448400-47459000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:47448600-47467200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:47451600-47464400	Weak transcription	Fetal Stomach	stomach
5	chr13:47452600-47455000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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