Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1330967	0.87[AFR][1000 genomes]
rs1330968	0.88[AFR][1000 genomes]
rs1330969	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17057723	1.00[EUR][1000 genomes]
rs17057922	1.00[EUR][1000 genomes]
rs17057928	1.00[EUR][1000 genomes]
rs1854810	0.82[AFR][1000 genomes]
rs2231334	1.00[EUR][1000 genomes]
rs58761976	1.00[EUR][1000 genomes]
rs591476	1.00[EUR][1000 genomes]
rs608474	1.00[EUR][1000 genomes]
rs611989	1.00[EUR][1000 genomes]
rs6563606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317798	1.00[EUR][1000 genomes]
rs73460211	1.00[EUR][1000 genomes]
rs73460212	1.00[EUR][1000 genomes]
rs73460215	1.00[EUR][1000 genomes]
rs73460289	1.00[EUR][1000 genomes]
rs73460298	1.00[EUR][1000 genomes]
rs73462314	1.00[EUR][1000 genomes]
rs73462331	1.00[EUR][1000 genomes]
rs73462332	1.00[EUR][1000 genomes]
rs73462335	1.00[EUR][1000 genomes]
rs9532205	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9548309	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900004	chr13:38803974-38900435	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38870000-38882000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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