Variant report

Variant	rs73460298
Chromosome Location	chr13:38941838-38941839
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38937794..38939477-chr13:38941816..38944782,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1330969	1.00[EUR][1000 genomes]
rs17057723	1.00[EUR][1000 genomes]
rs17057922	1.00[EUR][1000 genomes]
rs17057928	1.00[EUR][1000 genomes]
rs2231334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4941892	1.00[EUR][1000 genomes]
rs58761976	1.00[EUR][1000 genomes]
rs591476	1.00[EUR][1000 genomes]
rs608474	1.00[EUR][1000 genomes]
rs611989	1.00[EUR][1000 genomes]
rs6563606	1.00[EUR][1000 genomes]
rs7317798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73460211	1.00[EUR][1000 genomes]
rs73460212	1.00[EUR][1000 genomes]
rs73460215	1.00[EUR][1000 genomes]
rs73460289	1.00[EUR][1000 genomes]
rs73462314	1.00[EUR][1000 genomes]
rs73462331	1.00[EUR][1000 genomes]
rs73462332	1.00[EUR][1000 genomes]
rs73462335	1.00[EUR][1000 genomes]
rs9532205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1851668	chr13:38928976-38948851	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38926200-38947000	Weak transcription	Ovary	ovary
2	chr13:38926200-38947000	Weak transcription	Hela-S3	cervix
3	chr13:38927400-38943200	Weak transcription	K562	blood
4	chr13:38933600-38943000	Weak transcription	Fetal Heart	heart
5	chr13:38936400-38947200	Weak transcription	HepG2	liver
6	chr13:38938000-38943200	Weak transcription	Fetal Brain Female	brain
7	chr13:38938000-38943400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:38938000-38946800	Weak transcription	Liver	Liver
9	chr13:38938000-38947000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:38938000-38947200	Weak transcription	Fetal Kidney	kidney
11	chr13:38939800-38942000	Enhancers	NHDF-Ad	bronchial
12	chr13:38940400-38942000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:38940400-38944800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr13:38940600-38943800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:38940800-38942400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr13:38940800-38943200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr13:38940800-38943200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:38941000-38942000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:38941000-38942000	Enhancers	HUVEC	blood vessel
20	chr13:38941000-38942000	Enhancers	NHEK	skin
21	chr13:38941000-38942600	Enhancers	HMEC	breast
22	chr13:38941600-38942000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:38941800-38942000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:38941800-38942400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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