Variant report

Variant	rs7317798
Chromosome Location	chr13:38947850-38947851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38923241..38925900-chr13:38946340..38949227,2	MCF-7	breast:
2	chr13:38922928..38925476-chr13:38947083..38949963,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UFM1-9	chr13:38946993-38948072	NONHSAT033274

Variant related genes	Relation type
ENSG00000120686	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1330969	1.00[EUR][1000 genomes]
rs17057723	1.00[EUR][1000 genomes]
rs17057922	1.00[EUR][1000 genomes]
rs17057928	1.00[EUR][1000 genomes]
rs2231334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4941892	1.00[EUR][1000 genomes]
rs58761976	1.00[EUR][1000 genomes]
rs591476	1.00[EUR][1000 genomes]
rs608474	1.00[EUR][1000 genomes]
rs611989	1.00[EUR][1000 genomes]
rs6563606	1.00[EUR][1000 genomes]
rs73460211	1.00[EUR][1000 genomes]
rs73460212	1.00[EUR][1000 genomes]
rs73460215	1.00[EUR][1000 genomes]
rs73460289	1.00[EUR][1000 genomes]
rs73460298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462314	1.00[EUR][1000 genomes]
rs73462331	1.00[EUR][1000 genomes]
rs73462332	1.00[EUR][1000 genomes]
rs73462335	1.00[EUR][1000 genomes]
rs9532205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1851668	chr13:38928976-38948851	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38942200-38951000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38944200-38949600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr13:38947200-38948000	Enhancers	HepG2	liver
4	chr13:38947400-38948400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:38947600-38948600	Enhancers	Hela-S3	cervix

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