Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1330969	1.00[EUR][1000 genomes]
rs17057723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17057922	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17057928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2231334	1.00[EUR][1000 genomes]
rs4941892	1.00[EUR][1000 genomes]
rs58761976	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs591476	1.00[EUR][1000 genomes]
rs608474	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs611989	1.00[EUR][1000 genomes]
rs6563606	1.00[EUR][1000 genomes]
rs7317798	1.00[EUR][1000 genomes]
rs73460211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73460212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73460215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73460289	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73460298	1.00[EUR][1000 genomes]
rs73462314	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462331	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462335	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9532205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38951600-38959400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38956200-38959200	Weak transcription	HMEC	breast
3	chr13:38956400-38960200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:38956600-38959200	Weak transcription	Fetal Kidney	kidney
5	chr13:38956800-38959200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:38957200-38962400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:38957400-38960200	Weak transcription	Fetal Lung	lung
8	chr13:38958000-38959200	Enhancers	NHDF-Ad	bronchial
9	chr13:38959000-38960000	Enhancers	Ovary	ovary
10	chr13:38959000-38960600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: