Variant report

Variant	rs497028
Chromosome Location	chr11:50388818-50388819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 185 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs17568903	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3904265	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4066577	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4096596	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs479037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs514030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs514031	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs517087	0.95[EUR][1000 genomes]
rs55683055	0.80[EUR][1000 genomes]
rs55866129	0.85[EUR][1000 genomes]
rs55880405	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56134016	0.80[EUR][1000 genomes]
rs56136311	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56294529	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56386400	0.85[EUR][1000 genomes]
rs61891521	1.00[AMR][1000 genomes]
rs61891528	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61891961	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61891966	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61892000	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892001	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892002	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892003	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892005	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892025	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61892033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61892034	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61892037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61892038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61892039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61892040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61892044	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892045	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61892887	0.80[EUR][1000 genomes]
rs61892888	0.80[EUR][1000 genomes]
rs61892890	0.80[EUR][1000 genomes]
rs61892892	0.80[EUR][1000 genomes]
rs61893067	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61893068	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61893069	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61893071	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61893072	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61893074	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61893076	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61893105	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61893158	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61893159	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61893251	0.85[EUR][1000 genomes]
rs61893252	0.80[EUR][1000 genomes]
rs61893255	0.85[EUR][1000 genomes]
rs61893256	0.85[EUR][1000 genomes]
rs61893257	0.85[EUR][1000 genomes]
rs61893259	0.85[EUR][1000 genomes]
rs61894060	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61894061	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61894062	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61894063	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61894064	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61894067	0.95[EUR][1000 genomes]
rs61894068	0.95[EUR][1000 genomes]
rs61894070	0.95[EUR][1000 genomes]
rs61894071	0.95[EUR][1000 genomes]
rs61894072	0.95[EUR][1000 genomes]
rs61894073	0.95[EUR][1000 genomes]
rs61894074	0.95[EUR][1000 genomes]
rs61894075	0.95[EUR][1000 genomes]
rs61894076	0.95[EUR][1000 genomes]
rs61894090	0.95[EUR][1000 genomes]
rs61894093	0.95[EUR][1000 genomes]
rs61894560	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61894564	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61894565	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61894566	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61895304	0.85[EUR][1000 genomes]
rs61895305	0.85[EUR][1000 genomes]
rs61895306	0.85[EUR][1000 genomes]
rs61895307	0.81[EUR][1000 genomes]
rs61895315	0.80[EUR][1000 genomes]
rs61895316	0.80[EUR][1000 genomes]
rs61895317	0.80[EUR][1000 genomes]
rs691598	0.95[EUR][1000 genomes]
rs692193	0.95[EUR][1000 genomes]
rs692480	0.95[EUR][1000 genomes]
rs7120107	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7123452	0.85[EUR][1000 genomes]
rs7128387	1.00[AMR][1000 genomes]
rs7293947	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7293969	0.85[EUR][1000 genomes]
rs7932446	0.80[EUR][1000 genomes]
rs7936183	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7942170	0.95[EUR][1000 genomes]
rs7943197	0.85[EUR][1000 genomes]
rs7944005	0.90[EUR][1000 genomes]
rs7946780	0.95[EUR][1000 genomes]
rs7947240	0.95[EUR][1000 genomes]
rs8188850	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8189244	0.95[EUR][1000 genomes]
rs8189421	0.95[EUR][1000 genomes]
rs8189424	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:86 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051021	chr11:49692184-50658777	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1036701	chr11:49846590-50769305	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv554395	chr11:50008258-50642550	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1047235	chr11:50012174-50769305	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1051699	chr11:50013671-50769305	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1037403	chr11:50019556-50751358	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1044792	chr11:50019556-50769305	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv2758270	chr11:50056424-50447563	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2759827	chr11:50056424-50449192	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv467877	chr11:50057854-50642550	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv554396	chr11:50057854-50642550	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	esv3693389	chr11:50058095-50713402	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1035439	chr11:50121285-50524009	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1049947	chr11:50121285-50524009	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1035641	chr11:50121285-50573214	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv1041731	chr11:50121285-50590065	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1053769	chr11:50121285-50613401	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv1042046	chr11:50121285-50637245	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
19	nsv1051675	chr11:50121285-50637245	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv554397	chr11:50121285-50642550	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv554402	chr11:50121285-50642550	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv897506	chr11:50121285-50642550	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
23	nsv1047502	chr11:50121285-50651567	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv1051055	chr11:50121285-50658777	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv554400	chr11:50121285-50736106	Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
26	nsv554398	chr11:50121285-50738763	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv554399	chr11:50121285-50766308	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv554401	chr11:50121285-50766308	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
29	nsv1035727	chr11:50121285-50769305	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
30	nsv1036371	chr11:50121285-50769305	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv1042993	chr11:50121285-50769305	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
32	nsv1045083	chr11:50121285-50769305	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
33	nsv1051800	chr11:50121285-50769305	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
34	nsv1051873	chr11:50121285-50769305	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
35	nsv897507	chr11:50121285-51093950	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
36	nsv1040407	chr11:50121285-51095992	Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
37	esv2760366	chr11:50138650-50524009	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
38	nsv897509	chr11:50152718-50440270	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
39	nsv554403	chr11:50164027-50766308	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
40	esv2757444	chr11:50171877-50449192	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
41	esv2760206	chr11:50203494-51096372	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
42	nsv430385	chr11:50218185-50702639	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
43	nsv554405	chr11:50238212-50642550	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
44	nsv897513	chr11:50245252-51093950	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
45	nsv554406	chr11:50249873-50766308	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
46	nsv1040060	chr11:50271324-50450684	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
47	nsv1048846	chr11:50281305-50769305	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
48	nsv1052475	chr11:50283977-50524009	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
49	nsv897514	chr11:50297005-50440270	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
50	nsv897515	chr11:50297005-50513596	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:50385000-50395000	ZNF genes & repeats	Liver	Liver
2	chr11:50386600-50394400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr11:50387200-50393600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr11:50388000-50391000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr11:50388000-50392600	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr11:50388800-50390400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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