Variant report

Variant	rs4975848
Chromosome Location	chr5:1800970-1800971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr5:1799770-1802111	K562	blood:	n/a	chr5:1799990-1799999 chr5:1799987-1799996 chr5:1800154-1800168 chr5:1799991-1800000 chr5:1799988-1799997
2	RCOR1	chr5:1799791-1801796	Hela-S3	cervix:	n/a	n/a
3	SMARCC2	chr5:1799899-1801839	Hela-S3	cervix:	n/a	n/a
4	TBP	chr5:1799280-1802309	K562	blood:	n/a	n/a
5	STAT1	chr5:1800696-1801510	GM12878	blood:	n/a	n/a
6	POLR2A	chr5:1799337-1802213	K562	blood:	n/a	n/a
7	STAT5A	chr5:1800706-1801854	GM12878	blood:	n/a	n/a
8	POLR2A	chr5:1799154-1802375	MCF10A-Er-Src	breast:	n/a	n/a
9	MAX	chr5:1799413-1801875	HepG2	liver:	n/a	chr5:1800000-1800009 chr5:1800776-1800789 chr5:1799998-1800011 chr5:1800779-1800788 chr5:1799988-1799998 chr5:1800776-1800789 chr5:1799999-1800010 chr5:1799985-1799995 chr5:1800778-1800787 chr5:1800000-1800009 chr5:1800778-1800787 chr5:1800777-1800788 chr5:1800777-1800788 chr5:1800778-1800787
10	HA-E2F1	chr5:1799960-1802245	MCF-7	breast:	n/a	chr5:1801422-1801431 chr5:1801419-1801431 chr5:1801475-1801484 chr5:1800052-1800061 chr5:1801454-1801461 chr5:1801453-1801462 chr5:1799984-1799993
11	USF1	chr5:1800454-1801070	H1-hESC	embryonic stem cell:	n/a	chr5:1800776-1800787 chr5:1800606-1800622
12	CHD1	chr5:1799337-1802013	GM12878	blood:	n/a	chr5:1801420-1801430
13	SMARCC1	chr5:1800159-1802268	Hela-S3	cervix:	n/a	n/a
14	TBP	chr5:1799787-1802268	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr5:1799089-1802204	HepG2	liver:	n/a	n/a
16	POLR2A	chr5:1799582-1801049	ECC-1	luminal epithelium:	n/a	n/a
17	TEAD4	chr5:1799783-1801813	K562	blood:	n/a	n/a
18	POLR2A	chr5:1799155-1802340	Hela-S3	cervix:	n/a	n/a
19	NFE2	chr5:1800877-1801185	GM12878	blood:	n/a	n/a
20	POLR2A	chr5:1800877-1801072	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr5:1798976-1802439	Hela-S3	cervix:	n/a	n/a
22	RCOR1	chr5:1800905-1801687	GM12878	blood:	n/a	n/a
23	USF1	chr5:1800472-1801047	HepG2	liver:	n/a	chr5:1800776-1800787 chr5:1800606-1800622
24	TFAP2C	chr5:1799840-1802225	Hela-S3	cervix:	n/a	n/a
25	MYBL2	chr5:1800550-1801011	HepG2	liver:	n/a	n/a
26	POLR2A	chr5:1800367-1801848	PFSK-1	brain:	n/a	n/a
27	SMC3	chr5:1799868-1801925	Hela-S3	cervix:	n/a	chr5:1801716-1801723 chr5:1801424-1801434
28	IRF1	chr5:1799536-1802910	K562	blood:	n/a	chr5:1799833-1799847 chr5:1800183-1800196 chr5:1801111-1801131 chr5:1801418-1801432
29	RUNX3	chr5:1799602-1801810	GM12878	blood:	n/a	n/a
30	MAX	chr5:1800504-1801963	H1-hESC	embryonic stem cell:	n/a	chr5:1800776-1800789 chr5:1800779-1800788 chr5:1800776-1800789 chr5:1800778-1800787 chr5:1800778-1800787 chr5:1800777-1800788 chr5:1800777-1800788 chr5:1800778-1800787
31	ELK1	chr5:1799837-1801828	Hela-S3	cervix:	n/a	n/a
32	MXI1	chr5:1799161-1802292	Hela-S3	cervix:	n/a	chr5:1800777-1800786 chr5:1799999-1800008 chr5:1800586-1800595
33	POLR2A	chr5:1799722-1801894	HUVEC	blood vessel:	n/a	n/a
34	MXI1	chr5:1800846-1801900	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr5:1799936-1801932	K562	blood:	n/a	chr5:1801249-1801262 chr5:1801687-1801700
36	POLR2A	chr5:1799185-1801993	NB4	blood:	n/a	n/a
37	MYC	chr5:1800669-1801621	MCF10A-Er-Src	breast:	n/a	chr5:1800778-1800787 chr5:1800778-1800787 chr5:1800778-1800787 chr5:1800776-1800789 chr5:1800776-1800789 chr5:1800777-1800788 chr5:1800777-1800788 chr5:1800779-1800788
38	ZNF143	chr5:1800849-1801746	GM12878	blood:	n/a	n/a
39	RELA	chr5:1799720-1801844	GM12891	blood:	n/a	n/a
40	MAX	chr5:1799055-1801992	HepG2	liver:	n/a	chr5:1800000-1800009 chr5:1800776-1800789 chr5:1799998-1800011 chr5:1800779-1800788 chr5:1799988-1799998 chr5:1800776-1800789 chr5:1799999-1800010 chr5:1799985-1799995 chr5:1800778-1800787 chr5:1800000-1800009 chr5:1800778-1800787 chr5:1800777-1800788 chr5:1800777-1800788 chr5:1800778-1800787
41	MAX	chr5:1800452-1801003	K562	blood:	n/a	chr5:1800776-1800789 chr5:1800779-1800788 chr5:1800776-1800789 chr5:1800778-1800787 chr5:1800778-1800787 chr5:1800777-1800788 chr5:1800777-1800788 chr5:1800778-1800787
42	POLR2A	chr5:1799659-1801688	HepG2	liver:	n/a	n/a
43	MAX	chr5:1799053-1802002	HepG2	liver:	n/a	chr5:1800000-1800009 chr5:1800776-1800789 chr5:1799998-1800011 chr5:1800779-1800788 chr5:1799988-1799998 chr5:1800776-1800789 chr5:1799999-1800010 chr5:1799985-1799995 chr5:1800778-1800787 chr5:1800000-1800009 chr5:1800778-1800787 chr5:1800777-1800788 chr5:1800777-1800788 chr5:1800778-1800787
44	POLR2A	chr5:1799095-1802307	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr5:1799675-1801987	HCT-116	colon:	n/a	n/a
46	MAX	chr5:1799111-1802062	NB4	blood:	n/a	chr5:1800000-1800009 chr5:1800776-1800789 chr5:1799998-1800011 chr5:1800779-1800788 chr5:1799988-1799998 chr5:1800776-1800789 chr5:1799999-1800010 chr5:1799985-1799995 chr5:1800778-1800787 chr5:1800000-1800009 chr5:1800778-1800787 chr5:1800777-1800788 chr5:1800777-1800788 chr5:1800778-1800787
47	REST	chr5:1800722-1802253	H1-neurons	neurons:	n/a	n/a
48	MYBL2	chr5:1800732-1801171	HepG2	liver:	n/a	n/a
49	HEY1	chr5:1799100-1801013	K562	blood:	n/a	chr5:1800043-1800058 chr5:1799985-1800000 chr5:1799511-1799526
50	NR2F2	chr5:1799652-1802257	K562	blood:	n/a	chr5:1799988-1800003 chr5:1801506-1801521

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:1800961-1801011	LNCaP	prostate:	n/a
2	chr5:1800961-1801011	Hepatocyte	liver:	n/a
3	chr5:1800961-1801011	HEK293	kidney:	embryo
4	chr5:1800961-1801011	Caco-2	colon:	n/a
5	chr5:1800961-1801011	AoSMC	blood vessel:	n/a
6	chr5:1800961-1801011	HCF	heart:	n/a
7	chr5:1800961-1801011	H1-hESC	embryonic stem cell:	embryo
8	chr5:1800961-1801011	HCM	heart:	n/a
9	chr5:1800961-1801011	GM12878	blood:	n/a
10	chr5:1800961-1801011	K562	blood:	n/a
11	chr5:1800961-1801011	Hela-S3	cervix:	n/a
12	chr5:1800961-1801011	SK-N-MC	brain:	n/a
13	chr5:1800961-1801011	ovcar-3	ovarian:	n/a
14	chr5:1800961-1801011	NT2-D1	testis:	n/a
15	chr5:1800961-1801011	HCPEpiC	choroid plexus:	n/a
16	chr5:1800961-1801011	AG10803	skin:	n/a
17	chr5:1800961-1801011	AG09309	skin:	n/a
18	chr5:1800961-1801011	RPTEC	kidney:	n/a
19	chr5:1800961-1801011	HL-60	blood:	n/a
20	chr5:1800961-1801011	HPAEpiC	pulmonary alveolar:	n/a
21	chr5:1800961-1801011	PANC-1	pancreas:	n/a
22	chr5:1800961-1801011	MCF-7	breast:	n/a
23	chr5:1800961-1801011	AG04449	skin:	fetal
24	chr5:1800961-1801011	GM19239	blood:	n/a
25	chr5:1800961-1801011	HepG2	liver:	n/a
26	chr5:1800961-1801011	NHBE	bronchial:	n/a
27	chr5:1800961-1801011	NH-A	brain:	n/a
28	chr5:1800961-1801011	MCF10A-Er-Src	breast:	n/a
29	chr5:1800961-1801011	HRCEpiC	kidney:	n/a
30	chr5:1800961-1801011	HMEC	breast:	n/a
31	chr5:1800961-1801011	U87	brain:	n/a
32	chr5:1800961-1801011	CMK	blood:	n/a
33	chr5:1800961-1801011	GM06990	blood:	n/a
34	chr5:1800961-1801011	GM12891	blood:	n/a
35	chr5:1800961-1801011	SK-N-SH	brain:	n/a
36	chr5:1800961-1801011	AG04450	lung:	fetal
37	chr5:1800961-1801011	IMR90	lung:	fetal
38	chr5:1800961-1801011	SK-N-SH_RA	brain:	n/a
39	chr5:1800961-1801011	T-47D	breast:	n/a
40	chr5:1800961-1801011	Jurkat	blood:	n/a
41	chr5:1800961-1801011	HRPEpiC	eye:	n/a
42	chr5:1800961-1801011	BE2_C	brain:	n/a
43	chr5:1800961-1801011	HAEpiC	amniotic membrane:	n/a
44	chr5:1800961-1801011	HUVEC	blood vessel:	n/a
45	chr5:1800961-1801011	PFSK-1	brain:	n/a
46	chr5:1800961-1801011	BJ	skin:	n/a
47	chr5:1800961-1801011	ECC-1	luminal epithelium:	n/a
48	chr5:1800961-1801011	NB4	blood:	n/a
49	chr5:1800961-1801011	HIPEpiC	eye:	n/a
50	chr5:1800961-1801011	HEEpiC	esophagus:	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:56707453..56709236-chr5:1799018..1801500,2	MCF-7	breast:
2	chr5:1799841..1802509-chr5:1881368..1882987,2	K562	blood:
3	chr5:1799569..1802884-chr5:1886598..1889173,4	MCF-7	breast:
4	chr17:73716503..73719364-chr5:1799934..1802626,2	MCF-7	breast:
5	chr12:120728613..120731132-chr5:1800155..1802952,2	MCF-7	breast:
6	chr1:87379579..87380541-chr5:1800717..1801693,2	Hela-S3	cervix:
7	chr5:1793765..1806799-chr5:1879445..1889322,45	MCF-7	breast:
8	chr5:891450..893942-chr5:1800895..1802661,2	K562	blood:
9	chr5:1344287..1345865-chr5:1799704..1802609,2	K562	blood:
10	chr5:1796457..1805482-chr5:1878036..1885786,21	MCF-7	breast:
11	chr5:1343974..1345787-chr5:1800029..1802609,2	K562	blood:
12	chr5:1798942..1801341-chr5:1879541..1882987,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDUFS6-9	chr5:1799992-1801417	NONHSAT100069

Variant related genes	Relation type
MRPL36	TF binding region
NDUFS6	TF binding region
NDUFS6	CpG island
MRPL36	CpG island
ENSG00000249326	Chromatin interaction
ENSG00000153936	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000132470	Chromatin interaction
ENSG00000071539	Chromatin interaction
ENSG00000049656	Chromatin interaction
ENSG00000183291	Chromatin interaction
ENSG00000113430	Chromatin interaction
ENSG00000028310	Chromatin interaction
ENSG00000249116	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11133910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11133912	0.94[ASN][1000 genomes]
rs13187162	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1845288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1873926	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242412	0.89[ASN][1000 genomes]
rs2276986	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2291944	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs34233926	0.96[ASN][1000 genomes]
rs35380881	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3752844	0.83[YRI][hapmap]
rs3756343	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3756345	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3756346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3776141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3776142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3776143	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3776144	0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs3776145	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3776146	0.96[ASN][1000 genomes]
rs3776149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822364	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147770	0.99[ASN][1000 genomes]
rs4147772	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975845	0.81[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4975847	0.84[JPT][hapmap]
rs4975849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4975851	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4975852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4975853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55883912	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6555012	0.90[ASN][1000 genomes]
rs6863367	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7702843	0.95[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs972890	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972891	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs972892	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974722	0.86[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933805	chr5:1450724-1941619	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
3	nsv1034552	chr5:1658338-1856553	Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
4	nsv537606	chr5:1658338-1856553	Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1033147	chr5:1717303-1815821	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv1020703	chr5:1724199-1814288	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
8	nsv537608	chr5:1724199-1814288	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
9	nsv1024133	chr5:1736691-1826510	Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
10	nsv537609	chr5:1736691-1826510	Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1798400-1802400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:1798800-1802200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:1798800-1802400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:1798800-1802800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr5:1799000-1802200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:1799000-1802200	Active TSS	Left Ventricle	heart
7	chr5:1799000-1802400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:1799000-1802400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr5:1799000-1802400	Active TSS	Psoas Muscle	Psoas
10	chr5:1799000-1802600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr5:1799000-1802600	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr5:1799000-1802600	Active TSS	Fetal Intestine Small	intestine
13	chr5:1799000-1802600	Active TSS	A549	lung
14	chr5:1799200-1801400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:1799200-1802200	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr5:1799200-1802200	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr5:1799200-1802200	Active TSS	Aorta	Aorta
18	chr5:1799200-1802200	Active TSS	Fetal Kidney	kidney
19	chr5:1799200-1802200	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr5:1799200-1802200	Active TSS	Small Intestine	intestine
21	chr5:1799200-1802200	Active TSS	NHDF-Ad	bronchial
22	chr5:1799200-1802400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:1799200-1802600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:1799200-1802600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr5:1799200-1802800	Active TSS	GM12878-XiMat	blood
26	chr5:1799400-1801400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr5:1799400-1801800	Active TSS	Fetal Brain Female	brain
28	chr5:1799400-1802000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr5:1799400-1802000	Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr5:1799400-1802000	Active TSS	Brain Anterior Caudate	brain
31	chr5:1799400-1802000	Active TSS	Brain Germinal Matrix	brain
32	chr5:1799400-1802000	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr5:1799400-1802000	Active TSS	Colon Smooth Muscle	Colon
34	chr5:1799400-1802000	Active TSS	Stomach Mucosa	stomach
35	chr5:1799400-1802000	Active TSS	Thymus	Thymus
36	chr5:1799400-1802000	Active TSS	Spleen	Spleen
37	chr5:1799400-1802000	Active TSS	Dnd41	blood
38	chr5:1799400-1802200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr5:1799400-1802200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:1799400-1802200	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr5:1799400-1802200	Active TSS	Brain Angular Gyrus	brain
42	chr5:1799400-1802200	Active TSS	Brain Hippocampus Middle	brain
43	chr5:1799400-1802200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr5:1799400-1802200	Active TSS	Brain Substantia Nigra	brain
45	chr5:1799400-1802200	Active TSS	Esophagus	oesophagus
46	chr5:1799400-1802200	Active TSS	Gastric	stomach
47	chr5:1799400-1802200	Active TSS	Ovary	ovary
48	chr5:1799400-1802400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr5:1799400-1802400	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr5:1799400-1802400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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