Variant report

Variant	rs4979470
Chromosome Location	chr9:117652853-117652854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117652267..117654785-chr9:117659593..117661164,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1006026	0.91[EUR][1000 genomes]
rs10081728	0.83[EUR][1000 genomes]
rs10817682	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10817683	0.91[EUR][1000 genomes]
rs10817685	0.80[EUR][1000 genomes]
rs10982445	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982450	0.81[EUR][1000 genomes]
rs10982451	0.81[EUR][1000 genomes]
rs10982456	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1126711	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12337739	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12338765	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12347977	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12352646	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1322054	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1322056	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1322058	0.80[EUR][1000 genomes]
rs1322067	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1407309	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292087	0.82[EUR][1000 genomes]
rs2075533	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2181036	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2208640	0.82[EUR][1000 genomes]
rs2295800	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2418324	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418325	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2974	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3181195	0.82[EUR][1000 genomes]
rs3181197	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3181200	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3181201	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3181202	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3181348	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3181363	0.81[EUR][1000 genomes]
rs3181364	0.82[EUR][1000 genomes]
rs3181365	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3181366	0.82[EUR][1000 genomes]
rs3181367	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3181368	0.81[EUR][1000 genomes]
rs3181369	0.81[EUR][1000 genomes]
rs3181370	0.81[EUR][1000 genomes]
rs3181371	0.81[EUR][1000 genomes]
rs3181372	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3181374	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789879	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4978611	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4979471	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4979472	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4979473	0.82[EUR][1000 genomes]
rs5003740	0.87[ASN][1000 genomes]
rs6478117	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7025577	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7028578	0.81[EUR][1000 genomes]
rs7030090	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032773	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7037640	0.81[EUR][1000 genomes]
rs726657	0.82[EUR][1000 genomes]
rs7858603	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7872878	0.92[EUR][1000 genomes]
rs911603	0.86[AMR][1000 genomes]
rs927373	0.81[EUR][1000 genomes]
rs927374	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs927375	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117647800-117655600	Weak transcription	NHDF-Ad	bronchial
2	chr9:117649400-117653400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:117649400-117653400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr9:117650200-117653000	Enhancers	Primary T cells from cord blood	blood
5	chr9:117650400-117653000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:117650400-117653000	Enhancers	Dnd41	blood
7	chr9:117650600-117653600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr9:117651000-117653000	Enhancers	Primary B cells from peripheral blood	blood
9	chr9:117651000-117653200	Enhancers	Primary B cells from cord blood	blood
10	chr9:117651200-117656000	Weak transcription	Adipose Nuclei	Adipose
11	chr9:117651200-117656000	Weak transcription	HepG2	liver
12	chr9:117651400-117653000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:117651400-117655800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:117651400-117656200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:117651600-117656600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:117651600-117656600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:117651600-117656800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:117651600-117657000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:117651800-117656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:117651800-117657200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:117652400-117655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr9:117652400-117655400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:117652400-117655400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:117652400-117655400	Weak transcription	HMEC	breast
25	chr9:117652400-117655800	Weak transcription	Liver	Liver
26	chr9:117652400-117656000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:117652400-117656400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:117652600-117655000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:117652600-117655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:117652600-117655400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:117652600-117655600	Weak transcription	NHEK	skin
32	chr9:117652600-117655800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:117652600-117656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:117652600-117656000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:117652600-117656000	Weak transcription	HSMM	muscle
36	chr9:117652600-117656200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:117652600-117656200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr9:117652600-117656200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr9:117652600-117656200	Weak transcription	Spleen	Spleen
40	chr9:117652600-117656800	Weak transcription	Esophagus	oesophagus
41	chr9:117652600-117660000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:117652600-117662000	Weak transcription	Gastric	stomach
43	chr9:117652800-117654400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr9:117652800-117654400	Weak transcription	HUVEC	blood vessel
45	chr9:117652800-117654600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr9:117652800-117655200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr9:117652800-117655200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr9:117652800-117655200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:117652800-117655200	Weak transcription	Hela-S3	cervix
50	chr9:117652800-117655800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links