Variant report

Variant	rs7032773
Chromosome Location	chr9:117645562-117645563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1006026	0.92[EUR][1000 genomes]
rs10081728	0.84[EUR][1000 genomes]
rs10817682	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10817683	0.92[EUR][1000 genomes]
rs10817685	0.80[EUR][1000 genomes]
rs10982445	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982450	0.81[EUR][1000 genomes]
rs10982451	0.81[EUR][1000 genomes]
rs10982456	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1126711	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12337739	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12338765	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12347977	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12352646	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1322054	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1322056	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1322058	0.80[EUR][1000 genomes]
rs1322067	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1407309	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17292087	0.82[EUR][1000 genomes]
rs2075533	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2181036	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2208640	0.81[EUR][1000 genomes]
rs2295800	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2418324	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2418325	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2974	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3181195	0.82[EUR][1000 genomes]
rs3181197	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3181200	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3181201	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3181202	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3181348	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3181363	0.81[EUR][1000 genomes]
rs3181364	0.82[EUR][1000 genomes]
rs3181365	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3181366	0.82[EUR][1000 genomes]
rs3181367	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3181368	0.81[EUR][1000 genomes]
rs3181369	0.81[EUR][1000 genomes]
rs3181370	0.81[EUR][1000 genomes]
rs3181371	0.81[EUR][1000 genomes]
rs3181372	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3181374	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789879	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4978611	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4979470	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979471	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4979472	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4979473	0.83[EUR][1000 genomes]
rs5003740	0.82[ASN][1000 genomes]
rs6478117	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7025577	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7028578	0.81[EUR][1000 genomes]
rs7030090	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7037640	0.81[EUR][1000 genomes]
rs726657	0.83[EUR][1000 genomes]
rs7858603	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7872878	0.93[EUR][1000 genomes]
rs911603	0.87[AMR][1000 genomes]
rs927373	0.80[EUR][1000 genomes]
rs927374	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs927375	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv982340	chr9:117644577-117645935	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117633000-117647400	Weak transcription	Stomach Mucosa	stomach
2	chr9:117642400-117649000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:117643000-117652000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:117643200-117647200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:117643800-117651000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:117645000-117645800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
7	chr9:117645200-117646600	Enhancers	Monocytes-CD14+_RO01746	blood

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