Variant report

Variant	rs927375
Chromosome Location	chr9:117697947-117697948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1006026	0.84[EUR][1000 genomes]
rs10081728	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10817682	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10817683	0.83[EUR][1000 genomes]
rs10982445	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10982456	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1126711	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12337739	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12338765	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12347977	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12352646	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1322054	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1322056	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1322059	0.81[EUR][1000 genomes]
rs1322060	0.96[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1322067	0.83[EUR][1000 genomes]
rs1407309	0.88[AMR][1000 genomes]
rs2075533	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2181033	0.85[EUR][1000 genomes]
rs2181036	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2295800	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2418324	0.88[AMR][1000 genomes]
rs2418325	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2974	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3181197	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3181200	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3181201	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3181202	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3181348	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3181365	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3181367	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3181372	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3181374	0.84[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3789879	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4978611	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4979470	0.86[AMR][1000 genomes]
rs4979471	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4979472	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4979473	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6478117	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7025577	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7030090	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7032773	0.87[AMR][1000 genomes]
rs726656	0.81[EUR][1000 genomes]
rs726657	0.92[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7858603	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7872878	0.81[EUR][1000 genomes]
rs911603	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs927374	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117693800-117698800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:117694000-117698600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:117694200-117699600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:117694400-117698800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:117694400-117700200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:117695000-117698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:117695000-117700200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr9:117695200-117700800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:117695600-117701000	Weak transcription	Thymus	Thymus
10	chr9:117696200-117698600	Enhancers	Fetal Lung	lung
11	chr9:117697200-117698800	Enhancers	Adipose Nuclei	Adipose
12	chr9:117697600-117699800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:117697800-117698200	Enhancers	Monocytes-CD14+_RO01746	blood

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