Variant report

Variant	rs4990447
Chromosome Location	chr4:187357686-187357687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28673768	1.00[EUR][1000 genomes]
rs6825341	1.00[EUR][1000 genomes]
rs7691547	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:57 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv931977	chr4:186912987-187364756	Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv461865	chr4:187072383-187366649	Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv596401	chr4:187072383-187366649	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1023052	chr4:187244679-187534428	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1016739	chr4:187249894-187534428	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2757972	chr4:187261330-187422342	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2759310	chr4:187261330-187422342	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv461866	chr4:187262489-187529904	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv596417	chr4:187262489-187529904	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1022113	chr4:187268460-187534065	Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv880669	chr4:187297232-187382294	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv881663	chr4:187318091-187380057	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1024953	chr4:187332658-187525542	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv537435	chr4:187332658-187525542	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1016261	chr4:187332658-187564927	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv537436	chr4:187332658-187564927	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv511242	chr4:187347697-187360776	ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv989612	chr4:187350933-187357799	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3467740	chr4:187351558-187359656	ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3467741	chr4:187351558-187359656	Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv435794	chr4:187351632-187357838	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv3383182	chr4:187352258-187358856	ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv3394633	chr4:187352358-187358756	ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
25	esv3377999	chr4:187352458-187358756	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
26	esv3501099	chr4:187352493-187358101	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
27	esv3323187	chr4:187352808-187358706	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
28	nsv10625	chr4:187353044-187358125	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
29	esv3501098	chr4:187353190-187357844	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
30	esv1797290	chr4:187353341-187357757	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
31	esv1800269	chr4:187353341-187357757	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
32	esv1810517	chr4:187353341-187357757	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
33	esv1812375	chr4:187353341-187357757	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
34	esv1822008	chr4:187353341-187357757	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
35	esv1823690	chr4:187353341-187357757	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
36	esv1827722	chr4:187353341-187357757	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
37	esv1830545	chr4:187353341-187357757	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
38	esv1842861	chr4:187353341-187357757	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
39	esv1846200	chr4:187353341-187357757	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
40	nsv821190	chr4:187353459-187357809	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
41	esv1829280	chr4:187353496-187357879	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
42	esv1797555	chr4:187353496-187358097	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
43	esv1799669	chr4:187353496-187358097	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
44	esv1805807	chr4:187353496-187358097	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
45	esv1820648	chr4:187353496-187358097	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
46	esv1820868	chr4:187353496-187358097	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
47	esv1825263	chr4:187353496-187358097	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
48	esv1844193	chr4:187353496-187358097	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
49	esv1849223	chr4:187353496-187358097	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
50	esv1809076	chr4:187353496-187360710	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187357000-187357800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:187357000-187357800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:187357000-187357800	ZNF genes & repeats	Gastric	stomach
4	chr4:187357600-187357800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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