Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1324047	0.86[EUR][1000 genomes]
rs1324051	1.00[EUR][1000 genomes]
rs1324054	0.86[EUR][1000 genomes]
rs1359219	0.86[EUR][1000 genomes]
rs1408230	0.86[EUR][1000 genomes]
rs1408232	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1408233	0.86[EUR][1000 genomes]
rs1408236	0.86[EUR][1000 genomes]
rs1555640	0.86[EUR][1000 genomes]
rs1575528	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1575529	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4110783	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4309272	0.86[EUR][1000 genomes]
rs4465486	0.86[EUR][1000 genomes]
rs4941858	0.86[EUR][1000 genomes]
rs6563523	0.86[EUR][1000 genomes]
rs7319940	0.86[EUR][1000 genomes]
rs7327011	0.86[EUR][1000 genomes]
rs7329516	0.86[EUR][1000 genomes]
rs7336888	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9315481	0.86[EUR][1000 genomes]
rs9532026	0.86[EUR][1000 genomes]
rs9547769	0.86[EUR][1000 genomes]
rs9547770	0.86[EUR][1000 genomes]
rs9547771	0.86[EUR][1000 genomes]
rs9547772	0.86[EUR][1000 genomes]
rs9547773	0.86[EUR][1000 genomes]
rs9547774	0.86[EUR][1000 genomes]
rs9547784	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547785	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547787	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37881600-37886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:37881600-37887000	Weak transcription	NH-A	brain
3	chr13:37881600-37887000	Weak transcription	Osteobl	bone
4	chr13:37881800-37886400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:37882000-37887000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:37882000-37887200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:37883800-37887000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:37884200-37887200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:37884400-37885200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:37885200-37887000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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