Variant report

Variant	rs9315481
Chromosome Location	chr13:37864566-37864567
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12427675	0.87[AFR][1000 genomes]
rs1324047	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1324051	0.86[EUR][1000 genomes]
rs1324053	0.88[AFR][1000 genomes]
rs1324054	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359219	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359220	0.88[AFR][1000 genomes]
rs1359221	0.88[AFR][1000 genomes]
rs1408230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1408232	0.86[EUR][1000 genomes]
rs1408233	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1408234	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1408235	0.93[AMR][1000 genomes]
rs1408236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1555639	0.81[AFR][1000 genomes]
rs1555640	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1924448	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1924449	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2181792	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4110783	0.86[EUR][1000 genomes]
rs4309272	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4444210	0.92[AFR][1000 genomes]
rs4453348	0.88[AFR][1000 genomes]
rs4465486	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4941858	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4941861	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4943467	0.88[AFR][1000 genomes]
rs4943468	0.87[EUR][1000 genomes]
rs4943471	0.87[EUR][1000 genomes]
rs5015736	0.86[EUR][1000 genomes]
rs6563523	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7319940	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7327011	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7329516	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336888	0.86[EUR][1000 genomes]
rs7997323	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9532026	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547768	0.87[AFR][1000 genomes]
rs9547769	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547770	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547771	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547772	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547776	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9547778	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9547784	0.86[EUR][1000 genomes]
rs9547785	0.86[EUR][1000 genomes]
rs9547787	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv471128	chr13:37838294-37880725	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv976224	chr13:37849849-37867170	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv977366	chr13:37863277-37867170	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37861400-37877200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:37863400-37865200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links