Variant report

Variant	rs9547787
Chromosome Location	chr13:37881587-37881588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1324047	0.86[EUR][1000 genomes]
rs1324051	1.00[EUR][1000 genomes]
rs1324054	0.86[EUR][1000 genomes]
rs1359219	0.86[EUR][1000 genomes]
rs1408230	0.86[EUR][1000 genomes]
rs1408232	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1408233	0.86[EUR][1000 genomes]
rs1408236	0.86[EUR][1000 genomes]
rs1555640	0.86[EUR][1000 genomes]
rs1575528	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1575529	0.83[AMR][1000 genomes]
rs4110783	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4309272	0.86[EUR][1000 genomes]
rs4465486	0.86[EUR][1000 genomes]
rs4941858	0.86[EUR][1000 genomes]
rs5015736	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563523	0.86[EUR][1000 genomes]
rs7319940	0.86[EUR][1000 genomes]
rs7327011	0.86[EUR][1000 genomes]
rs7329516	0.86[EUR][1000 genomes]
rs7336888	1.00[EUR][1000 genomes]
rs9315481	0.86[EUR][1000 genomes]
rs9532026	0.86[EUR][1000 genomes]
rs9547769	0.86[EUR][1000 genomes]
rs9547770	0.86[EUR][1000 genomes]
rs9547771	0.86[EUR][1000 genomes]
rs9547772	0.86[EUR][1000 genomes]
rs9547773	0.86[EUR][1000 genomes]
rs9547774	0.86[EUR][1000 genomes]
rs9547784	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547785	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv3357087	chr13:37879377-37881925	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3417239	chr13:37879752-37881700	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37879600-37881800	Enhancers	NHEK	skin
2	chr13:37879800-37881800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:37880000-37881600	Enhancers	NHDF-Ad	bronchial
4	chr13:37880200-37881800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:37880600-37881600	Enhancers	Osteobl	bone
6	chr13:37880800-37881600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:37880800-37881600	Enhancers	HMEC	breast
8	chr13:37880800-37881600	Enhancers	HSMM	muscle
9	chr13:37880800-37881600	Enhancers	HUVEC	blood vessel
10	chr13:37880800-37881600	Enhancers	NH-A	brain
11	chr13:37880800-37881600	Enhancers	NHLF	lung
12	chr13:37881000-37881600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr13:37881000-37881800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:37881200-37881600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:37881200-37881600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:37881200-37881600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr13:37881200-37881600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:37881200-37881600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:37881200-37882000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:37881400-37881600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links