Variant report

Variant	rs6563523
Chromosome Location	chr13:37843367-37843368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12427675	0.83[AMR][1000 genomes]
rs1324047	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1324051	0.86[EUR][1000 genomes]
rs1324053	0.83[AMR][1000 genomes]
rs1324054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359219	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359220	0.83[AMR][1000 genomes]
rs1359221	0.83[AMR][1000 genomes]
rs1408230	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1408232	0.86[EUR][1000 genomes]
rs1408233	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1408235	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1408236	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1555639	0.83[AMR][1000 genomes]
rs1555640	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4110783	0.86[EUR][1000 genomes]
rs4309272	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4444210	0.83[AMR][1000 genomes]
rs4453348	0.83[AMR][1000 genomes]
rs4465486	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4941858	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943468	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4943471	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5015736	0.86[EUR][1000 genomes]
rs7319940	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7327011	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7329516	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336888	0.86[EUR][1000 genomes]
rs9315481	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9532026	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547768	0.83[AMR][1000 genomes]
rs9547769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547770	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547771	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547772	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547773	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547774	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547784	0.86[EUR][1000 genomes]
rs9547785	0.86[EUR][1000 genomes]
rs9547787	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv471128	chr13:37838294-37880725	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37837600-37845400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:37843200-37843600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:37843200-37843600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:37843200-37843600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:37843200-37843600	Enhancers	NH-A	brain
6	chr13:37843200-37843600	Enhancers	NHDF-Ad	bronchial
7	chr13:37843200-37843800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:37843200-37843800	Enhancers	HMEC	breast

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