Variant report

Variant	rs5024560
Chromosome Location	chr17:59636035-59636036
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10438755	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10438756	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11650703	0.82[EUR][1000 genomes]
rs11654397	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11655330	0.81[EUR][1000 genomes]
rs12452859	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12939687	0.85[ASN][1000 genomes]
rs12941500	0.81[EUR][1000 genomes]
rs12949631	0.82[EUR][1000 genomes]
rs12952180	0.81[EUR][1000 genomes]
rs1558275	0.87[ASN][1000 genomes]
rs1558276	0.87[ASN][1000 genomes]
rs2378870	0.80[AFR][1000 genomes]
rs4583315	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5024561	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457864	chr17:59612041-59646764	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
2	nsv575840	chr17:59612041-59646764	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59634000-59646200	Weak transcription	Stomach Mucosa	stomach
2	chr17:59634400-59636400	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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