Variant report

Variant	rs4583315
Chromosome Location	chr17:59634619-59634620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59632186..59636046-chr20:49410374..49412887,4	MCF-7	breast:
2	chr17:59149421..59151756-chr17:59633003..59634998,2	MCF-7	breast:
3	chr17:59634323..59636318-chr17:80605345..80606849,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124243	Chromatin interaction
ENSG00000141580	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10438755	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10438756	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11650703	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11654397	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655330	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11869403	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12451513	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12451827	0.89[EUR][1000 genomes]
rs12452859	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12939687	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12941500	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12943370	0.86[EUR][1000 genomes]
rs12949631	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12952180	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12952542	0.89[EUR][1000 genomes]
rs1476799	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1558275	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1558276	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1860414	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2079796	0.88[EUR][1000 genomes]
rs2378870	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2378871	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5024560	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5024561	0.81[ASN][1000 genomes]
rs8070410	0.88[AFR][1000 genomes]
rs8070532	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8071653	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs977745	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457864	chr17:59612041-59646764	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
2	nsv575840	chr17:59612041-59646764	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59634000-59646200	Weak transcription	Stomach Mucosa	stomach
2	chr17:59634200-59635200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:59634400-59634800	Enhancers	A549	lung
4	chr17:59634400-59636400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links