Variant report

Variant	rs8070532
Chromosome Location	chr17:59647643-59647644
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59644855..59647910-chr17:59841335..59844150,3	MCF-7	breast:
2	chr17:57916840..57919644-chr17:59646847..59650521,3	MCF-7	breast:
3	chr17:59645769..59648011-chr17:59764387..59766837,2	MCF-7	breast:
4	chr17:59645174..59648291-chr20:49346675..49349528,3	MCF-7	breast:
5	chr17:59646337..59648248-chr20:55839360..55841998,2	MCF-7	breast:
6	chr17:59645929..59648016-chr20:61659710..61661386,2	MCF-7	breast:
7	chr17:59646374..59647932-chr20:49411300..49413192,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000124171	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10438755	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10438756	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11650703	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11654397	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11655330	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11869403	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12451513	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12452859	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12939687	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12941500	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12943370	0.82[CEU][hapmap]
rs12949631	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12952180	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1476799	0.80[EUR][1000 genomes]
rs1558275	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1558276	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1860414	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2378870	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2378871	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4583315	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8064466	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8071653	0.82[EUR][1000 genomes]
rs977745	0.81[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59646600-59651800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:59646800-59652000	Weak transcription	Hela-S3	cervix

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