Variant report

Variant	rs8071653
Chromosome Location	chr17:59612041-59612042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59611491..59613980-chr7:73244808..73247104,2	MCF-7	breast:
2	chr17:59611230..59614063-chr2:169311401..169314222,2	MCF-7	breast:
3	chr17:59611865..59612805-chr17:59651938..59652656,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172292	Chromatin interaction
ENSG00000189143	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10438755	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10438756	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11650703	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11654397	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs11655330	0.81[CEU][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs11869403	0.84[EUR][1000 genomes]
rs12451513	0.83[MEX][hapmap];0.81[EUR][1000 genomes]
rs12451827	0.92[CEU][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12452859	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12939687	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12941500	0.81[CEU][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs12943370	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12949631	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12952180	0.86[EUR][1000 genomes]
rs12952542	0.92[CEU][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1476799	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1476800	0.83[GIH][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap]
rs1558275	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1558276	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1860414	0.84[EUR][1000 genomes]
rs2079796	0.92[CEU][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2378870	0.84[EUR][1000 genomes]
rs2378871	0.84[EUR][1000 genomes]
rs4583315	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8070532	0.82[EUR][1000 genomes]
rs977745	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457864	chr17:59612041-59646764	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
2	nsv575840	chr17:59612041-59646764	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8071653	TOM1L1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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