Variant report

Variant	rs2378870
Chromosome Location	chr17:59638623-59638624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38475019..38477589-chr17:59638398..59641028,2	MCF-7	breast:
2	chr17:59638559..59639093-chr17:59800446..59801004,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10438755	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10438756	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11650703	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11654397	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11655330	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11869403	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12451513	0.89[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12451827	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs12452859	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12939687	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12941500	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12943370	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs12949631	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12952180	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12952542	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs1476799	0.84[EUR][1000 genomes]
rs1476800	0.82[CHB][hapmap]
rs1558275	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1558276	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1860414	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2079796	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2378871	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4583315	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5024560	0.80[AFR][1000 genomes]
rs8070532	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8071653	0.84[EUR][1000 genomes]
rs977745	0.82[CHB][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457864	chr17:59612041-59646764	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
2	nsv575840	chr17:59612041-59646764	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59634000-59646200	Weak transcription	Stomach Mucosa	stomach
2	chr17:59638600-59639400	Enhancers	A549	lung

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