Variant report
Variant | rs12952180 |
---|---|
Chromosome Location | chr17:59646980-59646981 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:15)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:15 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr17:59644855..59647910-chr17:59841335..59844150,3 | MCF-7 | breast: | |
2 | chr17:59644698..59647505-chr20:52196256..52198648,3 | MCF-7 | breast: | |
3 | chr17:57922174..57925590-chr17:59644631..59647005,4 | MCF-7 | breast: | |
4 | chr17:57916840..57919644-chr17:59646847..59650521,3 | MCF-7 | breast: | |
5 | chr17:59645361..59647604-chr20:52823496..52825003,2 | MCF-7 | breast: | |
6 | chr17:59645769..59648011-chr17:59764387..59766837,2 | MCF-7 | breast: | |
7 | chr17:59645174..59648291-chr20:49346675..49349528,3 | MCF-7 | breast: | |
8 | chr17:59645078..59647528-chr20:52739899..52742175,2 | MCF-7 | breast: | |
9 | chr17:59646337..59648248-chr20:55839360..55841998,2 | MCF-7 | breast: | |
10 | chr10:93683550..93685113-chr17:59644992..59647516,2 | MCF-7 | breast: | |
11 | chr17:59644932..59647511-chr20:49403932..49406632,2 | MCF-7 | breast: | |
12 | chr17:59645929..59648016-chr20:61659710..61661386,2 | MCF-7 | breast: | |
13 | chr17:59646374..59647932-chr20:49411300..49413192,2 | MCF-7 | breast: | |
14 | chr17:59645061..59647542-chr4:153552803..153555273,2 | MCF-7 | breast: | |
15 | chr17:59489572..59490208-chr17:59646822..59647354,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000124243 | Chromatin interaction |
ENSG00000201524 | Chromatin interaction |
ENSG00000101132 | Chromatin interaction |
ENSG00000124171 | Chromatin interaction |
ENSG00000101144 | Chromatin interaction |
ENSG00000199004 | Chromatin interaction |
ENSG00000226308 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10438755 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs10438756 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs11650703 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs11654397 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs11655330 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11869403 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12451513 | 0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12451827 | 0.83[EUR][1000 genomes] |
rs12452859 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs12939687 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12941500 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12943370 | 0.82[EUR][1000 genomes] |
rs12949631 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12952542 | 0.83[EUR][1000 genomes] |
rs1476799 | 0.85[EUR][1000 genomes] |
rs1558275 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1558276 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1860414 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2079796 | 0.83[EUR][1000 genomes] |
rs2378870 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2378871 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs4583315 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs5024560 | 0.81[EUR][1000 genomes] |
rs8064466 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs8070532 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs8071653 | 0.86[EUR][1000 genomes] |
rs977745 | 0.86[EUR][1000 genomes] |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:59646600-59651800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr17:59646800-59647000 | Enhancers | A549 | lung |
3 | chr17:59646800-59652000 | Weak transcription | Hela-S3 | cervix |