Variant report

Variant	rs12451827
Chromosome Location	chr17:59600468-59600469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59600262..59603074-chr3:179369267..179371218,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000058056	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10438755	0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs10438756	0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs11650703	0.82[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs11654397	0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs11655330	0.95[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs11869403	0.81[EUR][1000 genomes]
rs12451513	0.95[MEX][hapmap];0.80[TSI][hapmap]
rs12452859	0.85[EUR][1000 genomes]
rs12941500	0.95[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs12943370	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12949631	0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs12952180	0.83[EUR][1000 genomes]
rs12952542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476799	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1476800	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.98[ASN][1000 genomes]
rs1558275	0.82[EUR][1000 genomes]
rs1558276	0.82[EUR][1000 genomes]
rs1860414	0.81[EUR][1000 genomes]
rs2079796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378870	0.81[EUR][1000 genomes]
rs2378871	0.81[EUR][1000 genomes]
rs34490317	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4583315	0.89[EUR][1000 genomes]
rs8064466	0.83[MEX][hapmap]
rs8071653	0.92[CEU][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs977745	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12451827	TOMM20	trans	parietal	SCAN
rs12451827	TOM1L1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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