Variant report

Variant	rs977745
Chromosome Location	chr17:59603321-59603322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:29817686..29820507-chr17:59603216..59605949,2	MCF-7	breast:
2	chr17:59600906..59603587-chr7:80536974..80538941,2	MCF-7	breast:
3	chr17:59601267..59603516-chr17:59603627..59606261,2	K562	blood:

Variant related genes	Relation type
ENSG00000103495	Chromatin interaction
ENSG00000259952	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10438755	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs10438756	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs11650703	0.88[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11654397	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs11655330	0.81[CEU][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs11869403	0.83[EUR][1000 genomes]
rs12451513	0.87[MEX][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs12451827	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12452859	0.88[EUR][1000 genomes]
rs12941500	0.81[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs12943370	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12949631	0.83[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12952180	0.86[EUR][1000 genomes]
rs12952542	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1476799	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1476800	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs1558275	0.85[EUR][1000 genomes]
rs1558276	0.85[EUR][1000 genomes]
rs1860414	0.84[EUR][1000 genomes]
rs2079796	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2378870	0.84[EUR][1000 genomes]
rs2378871	0.84[EUR][1000 genomes]
rs34490317	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4583315	0.91[EUR][1000 genomes]
rs8070532	0.81[EUR][1000 genomes]
rs8071653	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs977745	TOM1L1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
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