Variant report

Variant	rs12952542
Chromosome Location	chr17:59605331-59605332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59604176..59607105-chr20:55830524..55832893,2	MCF-7	breast:
2	chr16:29817686..29820507-chr17:59603216..59605949,2	MCF-7	breast:
3	chr17:59601267..59603516-chr17:59603627..59606261,2	K562	blood:

Variant related genes	Relation type
ENSG00000259952	Chromatin interaction
ENSG00000103495	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10438755	0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs10438756	0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs11650703	0.81[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11654397	0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs11655330	0.84[EUR][1000 genomes]
rs11869403	0.81[EUR][1000 genomes]
rs12451827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452859	0.86[EUR][1000 genomes]
rs12941500	0.84[EUR][1000 genomes]
rs12943370	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12949631	0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12952180	0.83[EUR][1000 genomes]
rs1476799	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1476800	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1558275	0.83[EUR][1000 genomes]
rs1558276	0.83[EUR][1000 genomes]
rs1860414	0.81[EUR][1000 genomes]
rs2079796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378870	0.82[EUR][1000 genomes]
rs2378871	0.82[EUR][1000 genomes]
rs34490317	0.88[AMR][1000 genomes]
rs4583315	0.89[EUR][1000 genomes]
rs8071653	0.92[CEU][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs977745	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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