Variant report

Variant	rs8064466
Chromosome Location	chr17:59644778-59644779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59643745..59646424-chr20:49405892..49407775,2	MCF-7	breast:
2	chr17:57919407..57921210-chr17:59643377..59645104,2	MCF-7	breast:
3	chr17:59644698..59647505-chr20:52196256..52198648,3	MCF-7	breast:
4	chr17:57922174..57925590-chr17:59644631..59647005,4	MCF-7	breast:
5	chr17:56734257..56736743-chr17:59644680..59646726,2	MCF-7	breast:
6	chr17:59644033..59646771-chr20:55842643..55845574,2	MCF-7	breast:
7	chr11:88348048..88349548-chr17:59644695..59646956,2	MCF-7	breast:
8	chr17:59644561..59646223-chr20:55682123..55684118,2	MCF-7	breast:
9	chr17:59643078..59646172-chr20:49409320..49413355,4	MCF-7	breast:
10	chr17:59644416..59645995-chr17:59912870..59914609,2	MCF-7	breast:
11	chr17:59643347..59646205-chr17:59710424..59712099,2	MCF-7	breast:
12	chr17:59644566..59646787-chr20:49409333..49412308,3	MCF-7	breast:
13	chr17:59643262..59645931-chr20:49357910..49359999,2	MCF-7	breast:
14	chr17:59644483..59646249-chr8:97970825..97972590,2	MCF-7	breast:
15	chr17:59643642..59646336-chr20:45831584..45833245,2	MCF-7	breast:
16	chr17:59644412..59646069-chr17:59940439..59942115,2	MCF-7	breast:
17	chr17:59644529..59646404-chr20:52213102..52214936,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000201524	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000136492	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11655330	0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11869403	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12451513	0.80[ASW][hapmap];0.92[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12451827	0.83[MEX][hapmap]
rs12941500	0.93[ASW][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12952180	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1476800	0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs1860414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8070532	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457864	chr17:59612041-59646764	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
2	nsv575840	chr17:59612041-59646764	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59634000-59646200	Weak transcription	Stomach Mucosa	stomach
2	chr17:59644400-59646800	Flanking Active TSS	A549	lung
3	chr17:59644400-59646800	Enhancers	HepG2	liver
4	chr17:59644600-59644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr17:59644600-59645400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:59644600-59646800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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