The 2.0 version of rSNPBase

Variant report

Variant rs504017
Chromosome Location chr19:39928107-39928108
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:39926600-39935200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr19:39927400-39928400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr19:39927400-39928600 Enhancers Fetal Muscle Trunk muscle
4 chr19:39927400-39928800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr19:39927400-39929800 Enhancers Placenta Placenta
6 chr19:39927400-39930200 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr19:39927400-39930400 Weak transcription K562 blood
8 chr19:39927400-39930800 Weak transcription Brain Angular Gyrus brain
9 chr19:39927400-39935200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr19:39927400-39935200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr19:39927400-39935200 Weak transcription Gastric stomach
12 chr19:39927400-39935200 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr19:39927600-39928400 Weak transcription Fetal Intestine Small intestine
14 chr19:39927600-39928600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr19:39927600-39928800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr19:39927600-39928800 Enhancers Fetal Intestine Large intestine
17 chr19:39927600-39929200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr19:39927600-39929200 Weak transcription Muscle Satellite Cultured Cells --
19 chr19:39927600-39929400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr19:39927600-39930200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr19:39927600-39930200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr19:39927600-39930600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr19:39927600-39930600 Weak transcription GM12878-XiMat blood
24 chr19:39927600-39930800 Weak transcription iPS-15b Cell Line embryonic stem cell
25 chr19:39927600-39930800 Weak transcription Brain Hippocampus Middle brain
26 chr19:39927600-39930800 Weak transcription Duodenum Mucosa Duodenum
27 chr19:39927600-39930800 Weak transcription Fetal Heart heart
28 chr19:39927600-39931000 Weak transcription Primary B cells from cord blood blood
29 chr19:39927600-39931000 Weak transcription Primary B cells from peripheral blood blood
30 chr19:39927600-39931000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr19:39927600-39931000 Weak transcription Liver Liver
32 chr19:39927600-39931000 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr19:39927600-39931000 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr19:39927600-39932000 Enhancers A549 lung
35 chr19:39927600-39934800 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr19:39927600-39935000 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr19:39927600-39935000 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr19:39927600-39935000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr19:39927600-39935000 Weak transcription Rectal Smooth Muscle rectum
40 chr19:39927600-39935000 Weak transcription HMEC breast
41 chr19:39927600-39935200 Weak transcription H1 Cell Line embryonic stem cell
42 chr19:39927600-39935200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
43 chr19:39927600-39935200 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr19:39927600-39935200 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr19:39927600-39935200 Weak transcription Brain Anterior Caudate brain
46 chr19:39927600-39935200 Weak transcription Brain Inferior Temporal Lobe brain
47 chr19:39927600-39935200 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr19:39927600-39935200 Weak transcription Fetal Kidney kidney
49 chr19:39927600-39935200 Weak transcription HSMMtube muscle
50 chr19:39927600-39935200 Weak transcription NHLF lung

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Last update: Aug 31, 2015