Variant report

Variant	rs508361
Chromosome Location	chr19:37430583-37430584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37428613..37430520-chr19:37430554..37432406,2	MCF-7	breast:
2	chr19:37411760..37413673-chr19:37428843..37431824,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10403679	0.84[EUR][1000 genomes]
rs10420554	0.85[EUR][1000 genomes]
rs10424584	0.85[EUR][1000 genomes]
rs13345491	0.84[EUR][1000 genomes]
rs1423047	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1644638	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1644640	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1644641	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1644642	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1644643	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1644645	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1644710	0.89[EUR][1000 genomes]
rs1644711	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1667331	0.88[EUR][1000 genomes]
rs1667340	0.84[EUR][1000 genomes]
rs1667343	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1667384	0.89[EUR][1000 genomes]
rs16971873	0.84[EUR][1000 genomes]
rs16971886	0.84[EUR][1000 genomes]
rs1726719	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1726724	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2547055	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2551047	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35011739	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3745768	0.84[EUR][1000 genomes]
rs3745770	0.84[EUR][1000 genomes]
rs472226	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs474017	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs475026	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs476194	0.80[AFR][1000 genomes]
rs484001	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs485034	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs491326	0.80[AFR][1000 genomes]
rs494804	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs496872	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs504549	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs505717	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs510214	0.80[AFR][1000 genomes]
rs510757	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs513406	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs517110	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs519551	0.91[EUR][1000 genomes]
rs519606	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs524802	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs528504	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs529468	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs540451	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs544543	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs547483	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs550017	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs551717	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs563786	0.88[AFR][1000 genomes]
rs565721	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs567796	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs568654	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs569371	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs573294	0.80[AFR][1000 genomes]
rs579452	0.80[AFR][1000 genomes]
rs7256001	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7257126	0.82[EUR][1000 genomes]
rs73039188	0.81[EUR][1000 genomes]
rs734381	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs826262	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs826289	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs826290	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826294	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs826296	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs826303	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs826304	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs826307	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs826314	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9676450	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
16	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs508361	ZNF585B	cis	Artery Tibial	GTEx
rs508361	AC012309.5	cis	Artery Tibial	GTEx
rs508361	AC012309.5	cis	Heart Left Ventricle	GTEx
rs508361	AC012309.5	cis	Esophagus Muscularis	GTEx
rs508361	ZNF585A	Cis_1M	lymphoblastoid	RTeQTL
rs508361	AC012309.5	cis	Esophagus Mucosa	GTEx
rs508361	AC012309.5	cis	Thyroid	GTEx

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37408200-37436400	Weak transcription	Fetal Thymus	thymus
2	chr19:37408200-37440600	Weak transcription	Stomach Mucosa	stomach
3	chr19:37408400-37440600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:37408600-37439600	Weak transcription	Fetal Heart	heart
5	chr19:37409000-37444800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37409000-37447400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:37415800-37444600	ZNF genes & repeats	Liver	Liver
8	chr19:37419400-37447400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:37420600-37443000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr19:37420600-37447400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:37420600-37447600	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr19:37426000-37432000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:37426800-37438200	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr19:37427000-37432200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr19:37427200-37433800	Strong transcription	Dnd41	blood
16	chr19:37427200-37437200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:37427200-37441600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
18	chr19:37427400-37430600	Strong transcription	Brain Substantia Nigra	brain
19	chr19:37427400-37431200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr19:37427400-37431400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr19:37427400-37432400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
22	chr19:37427400-37432400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
23	chr19:37427400-37432600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr19:37427400-37432800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:37427400-37432800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr19:37427400-37437200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
27	chr19:37427400-37437400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr19:37427600-37431000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr19:37427600-37431000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr19:37427600-37431000	Strong transcription	Brain Angular Gyrus	brain
31	chr19:37427600-37431000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr19:37427600-37431000	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr19:37427600-37431200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
34	chr19:37427600-37431200	Strong transcription	Fetal Kidney	kidney
35	chr19:37427600-37431400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
36	chr19:37427600-37431400	Strong transcription	Brain Anterior Caudate	brain
37	chr19:37427600-37432000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr19:37427600-37432000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr19:37427600-37432400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr19:37427600-37432600	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr19:37427600-37432800	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr19:37427600-37432800	Strong transcription	NHDF-Ad	bronchial
43	chr19:37427600-37436800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr19:37427800-37431600	Strong transcription	Brain Cingulate Gyrus	brain
45	chr19:37427800-37432000	Strong transcription	Placenta	Placenta
46	chr19:37427800-37434400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr19:37428000-37431000	Strong transcription	NH-A	brain
48	chr19:37428000-37431600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr19:37428000-37432000	Strong transcription	Primary B cells from cord blood	blood
50	chr19:37428200-37430800	Strong transcription	Psoas Muscle	Psoas

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