Variant report

Variant	rs514632
Chromosome Location	chr15:73626454-73626455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:73626394-73626515	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000259650	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1017809	0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs1029	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs11853109	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs1382780	0.87[YRI][hapmap];0.94[AMR][1000 genomes]
rs1648248	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1678245	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs1714529	0.89[YRI][hapmap];0.94[AMR][1000 genomes]
rs1714530	0.87[YRI][hapmap];0.94[AMR][1000 genomes]
rs1714532	0.94[AMR][1000 genomes]
rs1812363	0.94[AMR][1000 genomes]
rs1842164	0.82[AMR][1000 genomes]
rs1895842	0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1979410	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs2254390	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2254818	0.86[YRI][hapmap];0.94[AMR][1000 genomes]
rs2623990	0.88[YRI][hapmap];0.94[AMR][1000 genomes]
rs2623994	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2623996	0.88[AMR][1000 genomes]
rs2624002	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2660823	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2680347	0.89[YRI][hapmap];0.94[AMR][1000 genomes]
rs2680348	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2680350	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2680351	0.94[AMR][1000 genomes]
rs28547177	0.82[AMR][1000 genomes]
rs28582318	0.82[AMR][1000 genomes]
rs490567	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs492448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs524457	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs533460	0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs550212	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs576414	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7176908	0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs8035717	0.82[AMR][1000 genomes]
rs899480	1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs9920152	0.84[YRI][hapmap];0.82[AMR][1000 genomes]
rs9920459	0.89[YRI][hapmap];0.82[AMR][1000 genomes]
rs9920675	0.89[YRI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73617800-73634600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr15:73621200-73632600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:73621200-73634000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:73622000-73634000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:73622200-73630000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:73622200-73634400	Weak transcription	Brain Germinal Matrix	brain
7	chr15:73623000-73628000	Weak transcription	Fetal Brain Female	brain
8	chr15:73623200-73627000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:73623200-73627200	Weak transcription	Left Ventricle	heart
10	chr15:73623200-73627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:73623200-73628000	Weak transcription	Right Atrium	heart
12	chr15:73623600-73627200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:73623600-73635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:73623800-73632000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:73624000-73635400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:73624600-73635200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:73624600-73635600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:73624800-73632400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:73624800-73632600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:73625800-73628000	Weak transcription	Spleen	Spleen
21	chr15:73626000-73637800	Enhancers	Fetal Heart	heart
22	chr15:73626400-73628800	Enhancers	Right Ventricle	heart

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