Variant report

Variant	rs576414
Chromosome Location	chr15:73608919-73608920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73606322..73609750-chr15:73610871..73613707,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1017809	0.82[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1029	0.82[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11852881	0.82[CEU][hapmap]
rs11853109	0.82[CEU][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11856383	0.82[EUR][1000 genomes]
rs11856433	0.82[EUR][1000 genomes]
rs13329282	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1382780	0.82[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1648248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1678245	0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714529	0.82[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714530	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714532	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1812363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1842164	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1895842	0.82[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1979410	0.82[CEU][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2169952	0.82[EUR][1000 genomes]
rs2254390	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2254818	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2619259	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2623990	0.82[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623994	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2623996	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2624002	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2660823	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2680347	0.82[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2680348	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2680350	0.82[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2680351	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28547177	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28582318	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28808999	0.82[EUR][1000 genomes]
rs28828370	0.82[EUR][1000 genomes]
rs4287530	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4325518	0.82[EUR][1000 genomes]
rs4776626	0.82[EUR][1000 genomes]
rs490567	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs492448	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs514632	0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs524457	0.82[CEU][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs533460	0.82[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs550212	0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6495054	0.82[EUR][1000 genomes]
rs7176908	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7403367	0.82[EUR][1000 genomes]
rs8031718	0.82[EUR][1000 genomes]
rs8035717	0.82[CEU][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs899480	0.82[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920152	0.82[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920459	0.82[CEU][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920675	0.82[CEU][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73595600-73610200	Weak transcription	Fetal Brain Male	brain
2	chr15:73596400-73611000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:73596600-73610000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:73596600-73610200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:73596800-73609600	Weak transcription	Fetal Lung	lung
6	chr15:73596800-73616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:73597000-73609600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:73597000-73610000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:73598000-73610400	Weak transcription	Brain Germinal Matrix	brain
10	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
11	chr15:73598600-73610800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:73598800-73610800	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:73599600-73610800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:73600600-73611600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:73600800-73610800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:73601000-73617800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:73601400-73610000	Weak transcription	Fetal Stomach	stomach
19	chr15:73601400-73611800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:73601600-73610400	Weak transcription	Fetal Brain Female	brain
21	chr15:73601600-73615600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:73602000-73610000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:73602000-73611000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:73602000-73611400	Weak transcription	Aorta	Aorta
25	chr15:73605000-73610200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:73606200-73610200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:73607600-73610200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links