Variant report

Variant	rs2624002
Chromosome Location	chr15:73601419-73601420
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73599728..73601429-chr15:74001238..74003944,2	K562	blood:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1017809	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1029	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11852881	1.00[CEU][hapmap]
rs11853109	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11856383	0.82[EUR][1000 genomes]
rs11856433	0.82[EUR][1000 genomes]
rs11857053	0.82[EUR][1000 genomes]
rs13329282	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1382780	1.00[CEU][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1648248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1678245	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714529	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714530	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714532	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1812363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1842164	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1895842	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1979410	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2169952	0.82[EUR][1000 genomes]
rs2254390	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2254818	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2619259	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2623990	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623994	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2623996	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2660823	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2680347	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2680348	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2680350	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2680351	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28547177	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28582318	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28808999	0.82[EUR][1000 genomes]
rs28828370	0.82[EUR][1000 genomes]
rs4287530	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4325518	0.82[EUR][1000 genomes]
rs4776626	0.82[EUR][1000 genomes]
rs490567	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs492448	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs514632	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs524457	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs533460	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs550212	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs576414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495054	0.82[EUR][1000 genomes]
rs7176908	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7403367	0.82[EUR][1000 genomes]
rs8031718	0.82[EUR][1000 genomes]
rs8035717	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs899480	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920152	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920459	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920675	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:73588800-73601800	Strong transcription	Fetal Intestine Small	intestine
3	chr15:73593200-73601800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:73593200-73602000	Strong transcription	Aorta	Aorta
5	chr15:73595400-73603800	Weak transcription	Spleen	Spleen
6	chr15:73595600-73601600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:73595600-73610200	Weak transcription	Fetal Brain Male	brain
8	chr15:73596400-73611000	Weak transcription	Brain Anterior Caudate	brain
9	chr15:73596600-73610000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:73596600-73610200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:73596800-73602200	Weak transcription	Lung	lung
12	chr15:73596800-73609600	Weak transcription	Fetal Lung	lung
13	chr15:73596800-73616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:73597000-73606000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:73597000-73609600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:73597000-73610000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:73597200-73602200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:73597200-73603600	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:73597400-73603200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:73598000-73610400	Weak transcription	Brain Germinal Matrix	brain
21	chr15:73598200-73601600	Strong transcription	Stomach Smooth Muscle	stomach
22	chr15:73598200-73602000	Weak transcription	Gastric	stomach
23	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
24	chr15:73598400-73602000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:73598600-73610800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:73598800-73602000	Weak transcription	Brain Substantia Nigra	brain
27	chr15:73598800-73607400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:73598800-73610800	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:73599400-73601800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:73599600-73602800	Weak transcription	Colonic Mucosa	Colon
32	chr15:73599600-73610800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:73600000-73604400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:73600400-73601600	Strong transcription	Fetal Brain Female	brain
35	chr15:73600400-73603200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:73600600-73611600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:73600800-73603800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr15:73600800-73604200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr15:73600800-73606000	Weak transcription	Pancreas	Pancrea
40	chr15:73600800-73610800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:73601000-73617800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:73601400-73601600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:73601400-73604000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:73601400-73608800	Weak transcription	Fetal Intestine Large	intestine
45	chr15:73601400-73610000	Weak transcription	Fetal Stomach	stomach
46	chr15:73601400-73611800	Weak transcription	Brain Inferior Temporal Lobe	brain

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